Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1842 ATGCAGCTCCTTTTGCGAGAGTGGCCAAATGTACTTTCACTCTTGGGAGGTTTAATTGCTATAAAGACATTGATCATAACTGCAATTGGTCCTCGTGTTGGGCTTACTTTACAAGAAAGTGTAAGAATAGGATTGCTTCTATCCCAAGGAGGCGAGTTTGGATTTGTTGTTTTCTCTTTAGCAAATAGGCTTGGGGTGCTTCCTCTTGAGCTCAACAAGCTGCtcataattgttgttgtatTGTCAATGGCATTAACCCCATTTCTGAATGAAGCTGGAAGAAGGGCTGCAagttttattgaagaaaaatctgATGCTGAGAATAAACAGAAAGATTCTGAGATGGTTAACTTCAATGTTAGTGAACCTGTTGTTATCCTTGGATTTGGGCAAATGGGCCAGGTCCTTGCCAATTTCCTGTCCAATCCATTGGCTTCAGGAGGAGATAGTGATGCAGTAGGATGGCCTTATGTGGCATTTGATATTGACCCCACAGTAGTAAAGGCAGCTAGAAAAATTGGCTTTCCTGTACTCTATGGAGATGGATCACGTTCAGATGTTCTTCAATCTGCTGGTGTCAACTCTCCAAAAGCTATCATGATTATGTACACTGGGAAGAAGAAGACAATTGAAGCTGTTCAGAGGCTAAGATTGACTTTTCCTGCAATCCCAATCTATGCCAGAGCTCGAGATCTCAAGCATCTTTTAGATCTGAAGAAAGCAGGTGCAACGGATGCCATTTTGGAAAATGCAGAGACTAGCTTGCACCTGGGTTCTAAGCTGCTGAAAGGCCTTGGTGTGATGTCTGATGATGTAGCATTTTTGAGTCAGCTTATTAGAGATTCCATGGAGCTACAAGCTCAAGAAGCAATCAGCCAATCTGAATATCGTGAATTAGATATTATGAAACCGCTGCAGGTGAAAGTTGCTGACTTGCGGGAGGCACGTGTACCTGTGGCAACAACTTCACCAGAATCTGAATTATCAGAAATGAATCAGAAAGATCAACCTTCTTTGGTTAGAAATCAAAGGAAAGTAGATCCAGAAGAACAAGATTATGAACTAAATGAAGCTGTGAATTTAGAAGGAAATGGTGTTTTACTTAGTAAACAAAGTAGTGAAGAAAGCTCAATGGTTGTATCTACAGATGCTCCCAGACAGAAGAATGTAGTAGACCCATCAACCCTTTCCCATGGTGCCACTGAGGAACCCTGA 1215 0.4082 MQLLLREWPNVLSLLGGLIAIKTLIITAIGPRVGLTLQESVRIGLLLSQGGEFGFVVFSLANRLGVLPLELNKLLIIVVVLSMALTPFLNEAGRRAASFIEEKSDAENKQKDSEMVNFNVSEPVVILGFGQMGQVLANFLSNPLASGGDSDAVGWPYVAFDIDPTVVKAARKIGFPVLYGDGSRSDVLQSAGVNSPKAIMIMYTGKKKTIEAVQRLRLTFPAIPIYARARDLKHLLDLKKAGATDAILENAETSLHLGSKLLKGLGVMSDDVAFLSQLIRDSMELQAQEAISQSEYRELDIMKPLQVKVADLREARVPVATTSPESELSEMNQKDQPSLVRNQRKVDPEEQDYELNEAVNLEGNGVLLSKQSSEESSMVVSTDAPRQKNVVDPSTLSHGATEEP 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1842 404 Coils Coil 89 109 - -
Ssu5g1842 404 ProSiteProfiles RCK N-terminal domain profile. 123 255 IPR003148 GO:0006813
Ssu5g1842 404 MobiDBLite consensus disorder prediction 318 352 - -
Ssu5g1842 404 MobiDBLite consensus disorder prediction 365 396 - -
Ssu5g1842 404 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 351 - -
Ssu5g1842 404 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 1 351 - -
Ssu5g1842 404 Pfam TrkA-N domain 124 247 IPR003148 GO:0006813
Ssu5g1842 404 MobiDBLite consensus disorder prediction 365 404 - -
Ssu5g1842 404 Gene3D - 121 292 - -
Ssu5g1842 404 Pfam Sodium/hydrogen exchanger family 5 90 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu5g1842 404 MobiDBLite consensus disorder prediction 322 339 - -
Ssu5g1842 404 Gene3D - 1 98 IPR038770 -
Ssu5g1842 404 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 122 266 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1842 Ssu-Chr5 54864805 54868819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1842 1 312 Inorganic Solute Cotransporters AT4G04850 74.679 7.05e-160 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1842 - - aprc:113858933 663.685