Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1836 ATGGAGGACCCTACTTTTCTCCATCAGTGGCACTTGAGTTCTATTGATGAGCCTAACTTACTGCCAATAGCTGCTGCTTTTGGAGAGACTTTACAACACCATGCATTAACTTACCCAAACTTCAATCCCAGAACTTCCATGGAAACTGCACTTGCTGACATTGAAAGACCCACAAAACATCACAAAAACAACATCAACTGGAATTCCAACAGAAGTGCTCAGACATCAGAGACACAATTTGTTTCTTTCCCAAATCTTTTTTCATTAGAGGATTCCGATCACGTAAATCCATTTGGGTTAATGATGGCCAAGGATGAGATGGTTTGTCCTGTAACCAATATTAGCAGAACTCCTCCAGACACTATCTCTCAAGGAACCTTGGGGAATCATAACTATGTCTTCAAGGCATGCCAAGAGGCCAAAAAGATTGGGACACGTTCTAAACATTCTCAACCTCAAGACCACATAATGGCTGAAAGGAAGCGGCGAGAGAAGCTCAGCCAGCGGTTCATTGCTTTATCTGCCCTTGTTCCCGGACTACAGaagACGGACAAAGCTTCTGTTCTTGGAGATGCTATCAAATACTTGAAGCAATTGCAAGAGAAAGTGAAGGCTCTTCAGGAGGAACAGAACATGAAGAAAAATGTGGAATCTGTGGTAGTTGTGAAGAAATCTCATCTATCCAGTGATGTTAACAACTCTTCAGAATATGATGATCCATTTGACGAAGCACTGCCTGAAATTGAAGTAAGATTTTGTGAGAGAAATGTCCTCGTAAGAGTTCACTGTGAGAAGAGCAAAGGAGTTGTAGAAAAAACAATCCAGGAAATTGAGAAACTCCATCTGAAAGTCACCAATAGCAGTGCCATGACATTTGGGAGATGTGCCCTTGACATAACAATTATTGCTCAGATGGATATTGAATTTTGCATGGGAGTGAAGGATCTTGTGAGAAACCTACGCTCAGCTTTTACATCTTTCATGTGA 987 0.4134 MEDPTFLHQWHLSSIDEPNLLPIAAAFGETLQHHALTYPNFNPRTSMETALADIERPTKHHKNNINWNSNRSAQTSETQFVSFPNLFSLEDSDHVNPFGLMMAKDEMVCPVTNISRTPPDTISQGTLGNHNYVFKACQEAKKIGTRSKHSQPQDHIMAERKRREKLSQRFIALSALVPGLQKTDKASVLGDAIKYLKQLQEKVKALQEEQNMKKNVESVVVVKKSHLSSDVNNSSEYDDPFDEALPEIEVRFCERNVLVRVHCEKSKGVVEKTIQEIEKLHLKVTNSSAMTFGRCALDITIIAQMDIEFCMGVKDLVRNLRSAFTSFM 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1836 328 SMART finulus 156 205 IPR011598 GO:0046983
Ssu5g1836 328 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983
Ssu5g1836 328 Coils Coil 189 216 - -
Ssu5g1836 328 PANTHER BHLH TRANSCRIPTION FACTOR 1 327 - -
Ssu5g1836 328 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Ssu5g1836 328 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 1 327 - -
Ssu5g1836 328 Gene3D - 141 215 IPR036638 GO:0046983
Ssu5g1836 328 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 215 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1836 Ssu-Chr5 54748503 54749971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1836 150 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 57.923 3.47e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g1836 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1836 - - vun:114179595 510.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1836 5 54748503 54749971 Ssu5g1836 5 54748503 54749971 ECH
Ssu5g1836 5 54748503 54749971 Ssu1g0283 1 6730216 6732232 PCT