Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1828 ATGCTCAGTGTTTTTATGGTAGGTCACGGTGTTGACAGTGACATCTCCTGCTTAAGATCCATTAAGGATTCCTTGGAAGACCCGTTTAAGTACTTATCAGATTGGAACTTCAACAACAAAACCGAAGGTTTCATATGTATGTTTTTTGGCGTTCAATGCTGGCATCCTTACGAGAATAGAGTGCTAAATTTGAAACTATCAAACATGGGGCTGAAGGGTCAGTTTCCACGGGGCCTTCAGAATTGCTCTTCATTGACAGGCTTAGACCTTTCACTCAACGAGCTCACAGGACCCATCCCATCTGATATATCCACGTTACTCCCTTTCGTTACGACCCTGGATCTCTCATGGAACAAATTTAGTGGGGAAATTCCAGCAACTTTGGGTAACTGCACATACCTGAATAATCTGAAACTTGATAACAACATGCTAAGCGGTCATATCCCACAAGAACTTGGGCAGCTTCCCAAGattaaatcaatttcttttgcCAACAATCATTTATCAGGGCCGGTGCCTTCGTTCCTCCGAGGCTCAACTCATGTTGATTACGCCAATAATGGCGAACTTTGCGGTGGGCCTTTGCCTCCCTGTCCACTGGACAGGTCCAACGATTTCCCTCAATCATTCAAGGAGGGCCTCCTTGTTGGCTATGCTTTTTCAGTGACTTCTGTGATTGTCATTTACATGTCCTACTGTGCACCTTGGGAACAATCGAACCATAAAAGAAACAAGCACCGGAACAAGGCTAAAAAATCGGCAAATATATTTGTTCCATCGCTCAGGGGAAGAAGACACGAGCTGAAGCTCATCCGACACACCAATTGCAACCTCTGCAGTTGCAAGAGAAAGCTATCAAAGAGGTACTCTCTAGTCCCTACCATCCATCTCTCGAgtcaaatttcttttgttttcgaGATTTTGATCTTTGTGCTAACAGATAGAATGAAGTCCACAATGAGGTTCAGTGAAGTCAAAGATGCAACTAATTGTTTTTCTATAGACAATGCCATTGGGATGGGGAAAATTGGAATAACGTACAAGGGAAAGCTACCGAATGGTTGGAACCTTGCCATTAAGAGACTATTCGATTGTAAACAATTTAAGAGGCAGTTTCTTTTAGAAATAAGGATTCTTGGTAAATACAGACACATAAATATAGTTCCCTTGCTCGGGTTTTGTGcagaaagaaatgaaaggatTTTGGTGTACCAATACATGTCAAATGGAAGACTTTCGAAATGGTTGAACCCTTTAGAAAATGAAGTTGGATTGAAATGGCCTCAGAGGATCAAAATAGCACTTGGGGTAGCAAGAGGCTTATCCTGGCTCCATCATACCTGCAATTTGCATGTTGTGCATCTTAATATAAGTTCAGAGTGTGTCTTGCTAGATAAGAATTTTGAACCCAAAATATCCAATTTTGGACAGGCCAAGTTTATGAATCCCAACATTGACGATAGTGCGAGCGCGATATTTTATGTTGGCGATGGGAAGAAGGATGTCTATGACTTTGGTAGTTTGCTTTTTGAGCTAATCACAAGGAAAACACTGAAGGAGTTGTCACGTTCATCCTATACTACTAACCTATCTGGTAACccttcaaattattataatgcaATTGATGATTCATTGATTGGGGAAGGTTTTGAAAATGAGGTCTACACTCTCATCAAAGTTGCTTGTCAGTGTGTTCAACCTTTCCCAGATGAAAGGCCAACGATGCTTGAAGTTTATAACAATATGATCAATATATGGGGGGGACAACATAGATTCAGTAATGGTTCTGACGCACTCAACATATCTGTTTCTTTTACTAGTACAGATGAAATTGTTGAGCTATAA 1845 0.3973 MLSVFMVGHGVDSDISCLRSIKDSLEDPFKYLSDWNFNNKTEGFICMFFGVQCWHPYENRVLNLKLSNMGLKGQFPRGLQNCSSLTGLDLSLNELTGPIPSDISTLLPFVTTLDLSWNKFSGEIPATLGNCTYLNNLKLDNNMLSGHIPQELGQLPKIKSISFANNHLSGPVPSFLRGSTHVDYANNGELCGGPLPPCPLDRSNDFPQSFKEGLLVGYAFSVTSVIVIYMSYCAPWEQSNHKRNKHRNKAKKSANIFVPSLRGRRHELKLIRHTNCNLCSCKRKLSKRYSLVPTIHLSSQISFVFEILIFVLTDRMKSTMRFSEVKDATNCFSIDNAIGMGKIGITYKGKLPNGWNLAIKRLFDCKQFKRQFLLEIRILGKYRHINIVPLLGFCAERNERILVYQYMSNGRLSKWLNPLENEVGLKWPQRIKIALGVARGLSWLHHTCNLHVVHLNISSECVLLDKNFEPKISNFGQAKFMNPNIDDSASAIFYVGDGKKDVYDFGSLLFELITRKTLKELSRSSYTTNLSGNPSNYYNAIDDSLIGEGFENEVYTLIKVACQCVQPFPDERPTMLEVYNNMINIWGGQHRFSNGSDALNISVSFTSTDEIVEL 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1828 614 SUPERFAMILY L domain-like 12 187 - -
Ssu5g1828 614 ProSiteProfiles Protein kinase domain profile. 332 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1828 614 Gene3D Transferase(Phosphotransferase) domain 1 407 594 - -
Ssu5g1828 614 Pfam Leucine rich repeat N-terminal domain 12 54 IPR013210 -
Ssu5g1828 614 PANTHER RECEPTOR-LIKE PROTEIN 55 3 583 - -
Ssu5g1828 614 SUPERFAMILY Protein kinase-like (PK-like) 314 580 IPR011009 -
Ssu5g1828 614 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 3 583 - -
Ssu5g1828 614 Pfam Protein tyrosine and serine/threonine kinase 334 581 IPR001245 GO:0004672|GO:0006468
Ssu5g1828 614 Gene3D Ribonuclease Inhibitor 11 198 IPR032675 -
Ssu5g1828 614 Gene3D Phosphorylase Kinase; domain 1 304 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1828 Ssu-Chr5 54485878 54488959 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1828 12 597 Receptor kinase-like Gene Family AT3G28450 34.258 1.09e-105 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Ssu5g1828 PK_Tyr_Ser-Thr 8.9e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1828 - - gmx:102664092 846.654