Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1825 ATGTACAAGGCAACCCTTCCCAACGGTTGGTTCCTGGCAGTTAAGAGACTCTATGATTCTAAGTTGTTTATCAGAAGGTTCGAGGTAGAAATAATGATGGGGAGGTACAGTCACAGAAACTTAATGCCCCCAATCAGTTTCTgcatagaagaagaaagaaatgaaagaatattGGTGTATCAATACATGTCAAATGGAAGACTTTCCGATTGGTTGAATGATACCACAACATTAGGATGGCCTGCAGTTGTTAGGATTGCACTGGGGGTTGCAAGAGGTTTATCTTGCCTTCATCATAGTTTACATATGGCTCATCTCAGTATCGGCCACGAGAGTATCTTGTTAGGAGACAATTTTGAGCCCAGGATATCCAATTTTGGAAGGGCCATGTTCATAAAATATGATCTAGGCAAAAACATTGGATTTGAGAAGAAGGATTTGTACGACTTTGGAACATTGCTTTTTGAGATGATTAGGGGGAAGACATTTGGCCAAACACGTAAATGTCTTAGGCAACAACACTAA 525 0.3867 MYKATLPNGWFLAVKRLYDSKLFIRRFEVEIMMGRYSHRNLMPPISFCIEEERNERILVYQYMSNGRLSDWLNDTTTLGWPAVVRIALGVARGLSCLHHSLHMAHLSIGHESILLGDNFEPRISNFGRAMFIKYDLGKNIGFEKKDLYDFGTLLFEMIRGKTFGQTRKCLRQQH 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1825 174 Gene3D Transferase(Phosphotransferase) domain 1 63 173 - -
Ssu5g1825 174 ProSiteProfiles Protein kinase domain profile. 1 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1825 174 SUPERFAMILY Protein kinase-like (PK-like) 2 163 IPR011009 -
Ssu5g1825 174 Pfam Protein tyrosine and serine/threonine kinase 28 132 IPR001245 GO:0004672|GO:0006468
Ssu5g1825 174 Gene3D Phosphorylase Kinase; domain 1 1 62 - -
Ssu5g1825 174 PANTHER SERINE/THREONINE-PROTEIN KINASE BRI1-LIKE 1 1 168 - -
Ssu5g1825 174 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1825 Ssu-Chr5 54412394 54412918 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1825 1 161 Receptor kinase-like Gene Family AT5G07280 35.106 2.42e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Ssu5g1825 PK_Tyr_Ser-Thr 1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1825 - - gmx:102663800 301.982