Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1823 ATGgcttttcaaataaaaagggaTATTGCCATCCAGAGCTTCTTGTGTTCCATGCTCAGTGTTTTTATGGTAGGTCACGGTGTTGACAGTGACATCTCCTGCTTAAGATCCATTAAGGATTCGTTGGAAGACCCGTTTAAGTACTTATCAGATTGGAACTTCAACAACAAAACCGAAGGtttcatatgtatattttttggcGTTCAATGCTGGCATCCTTACGAGAATAGAGTGCTAAATTTGAAACTATCAAACATGGGGCTGAAGGGTCAGTTTCCACGGGGCCTTCAGAATTGCTCTTCATTGACAGGCTTAGACCTTTCACTCAACGAGCTCACAGGACCCATCCCATCTGATATATCCACGTTATTCCCTTTCGTTACCTCCATGGATCTCTCAAGTAACAAATTTAGTGGGGAAATTCCAGCAGCTTTGGGTAACTGCAGTTACCTGAATGCTCTTAGGCTTGATAACAACATGTTGAGCGGTCATATCCCACAAGCACTTGCGCAGCTTCCCAGGattaaatcaatttcttttgcCAACAATCATTTATCAGGGCCGGTGCCTTCGTTCTCCCGTGGCTCAGCTTCTGTTGAAAGTTATGCCAATAATAGCGGACTTTGTGGAGGGCCTTTGCCACCTTGCTCATTGGACAGGTCCAACGATTTCCCTCAGTCATTCAAGGAGGGCCTCCTTGTTGGCTATGCTTTTTCAGTGACTTCTGTTATTGTCATTTACATGTCCTACTATGCACCTTGGGAACAATCAAACCATAAAAGAAACAAGCACCGGAACAAGGCTAAAGAATTCGGCAAATATATTTGTTCCATCGCACGGGGGAAGAAGACACGAGCTGAAGCTCATCCAACACCCCAATTGCAACCTCTGCAGTTGCAAGAGAAAGCTATCAAAGAGATCTCTGTGCTAATGGATATAATGAAGTCCACAATGAGGTTCAATGAAGTCAAAGATGCAACTAATTGCTTTTCTATAAACAATGCCATTGGGATGGGGAAAATTGGAATAATGTACAAGGGAAAGCTATCGAATGGTTGGAACCTTGCCATTAAGAGACTATTcgattttaaacaatttaagaGGCAGATTCTTTTGGAAATAAGGATTCTTGGTAAATACAGACACAGAAATGTAGTTCCTTTGCTCGGGTTTTGTGtagaaagaaatgaaaggatTTTGGTATACCAATACATGTCAAATGGAAGGCTTTCAAAATGGTTGCACCCTTTAGAAAATGAAGTTGGATTGAAATGGCCTCAGAGGATCAAAATAGCACTTGGGGTAGCAAGAGGCTTATCCTGGCTCCATCATACCTGCAATTTGCATGTTGTGCATCTTAATATAAGTTCAGAGTGTGTCTTGCTAGATAAGAATTTTGAACCCAAAATATCCAATTTTGGACAGGCCAAGTTTATGAATCCCAACATTGAGGATAGTGCGAGCACAATATTTTATGTTGGCGATGGGAAGAAGGATGTCTATGACTTTGGTAGTTTGCTTTTTGAGCTAATCACAGGGAAAACACTGAAGGACTTGTCACGTTCATCCTATACTACTAACCTATCTGGTAACccttcaaattattataatgcaATTGATGATTCATTGATTGGGGAAGGTTTTGAAAATGAGGTCTACACTCTCATCAAAGTTGCTTGTAAGTGTGTTCAGCCTTTGCCAGATGAAAGGCCAACGATGCTTGaagtttataataatatgatcAATATATGGGGGGAACGACATAGATTCAGTAATGGTTCTGACGCACTCAACATATCTGTTTCTTTTACTAGTATAGATGAAATTGTTGAGCTATGA 1839 0.3877 MAFQIKRDIAIQSFLCSMLSVFMVGHGVDSDISCLRSIKDSLEDPFKYLSDWNFNNKTEGFICIFFGVQCWHPYENRVLNLKLSNMGLKGQFPRGLQNCSSLTGLDLSLNELTGPIPSDISTLFPFVTSMDLSSNKFSGEIPAALGNCSYLNALRLDNNMLSGHIPQALAQLPRIKSISFANNHLSGPVPSFSRGSASVESYANNSGLCGGPLPPCSLDRSNDFPQSFKEGLLVGYAFSVTSVIVIYMSYYAPWEQSNHKRNKHRNKAKEFGKYICSIARGKKTRAEAHPTPQLQPLQLQEKAIKEISVLMDIMKSTMRFNEVKDATNCFSINNAIGMGKIGIMYKGKLSNGWNLAIKRLFDFKQFKRQILLEIRILGKYRHRNVVPLLGFCVERNERILVYQYMSNGRLSKWLHPLENEVGLKWPQRIKIALGVARGLSWLHHTCNLHVVHLNISSECVLLDKNFEPKISNFGQAKFMNPNIEDSASTIFYVGDGKKDVYDFGSLLFELITGKTLKDLSRSSYTTNLSGNPSNYYNAIDDSLIGEGFENEVYTLIKVACKCVQPLPDERPTMLEVYNNMINIWGERHRFSNGSDALNISVSFTSIDEIVEL 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1823 612 Pfam Protein tyrosine and serine/threonine kinase 332 579 IPR001245 GO:0004672|GO:0006468
Ssu5g1823 612 Gene3D Transferase(Phosphotransferase) domain 1 405 598 - -
Ssu5g1823 612 PANTHER RECEPTOR-LIKE PROTEIN 55 8 581 - -
Ssu5g1823 612 SUPERFAMILY L domain-like 29 199 - -
Ssu5g1823 612 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Ssu5g1823 612 SUPERFAMILY Protein kinase-like (PK-like) 313 578 IPR011009 -
Ssu5g1823 612 Gene3D Ribonuclease Inhibitor 28 217 IPR032675 -
Ssu5g1823 612 Gene3D Phosphorylase Kinase; domain 1 293 404 - -
Ssu5g1823 612 ProSiteProfiles Protein kinase domain profile. 330 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1823 612 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 8 581 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1823 Ssu-Chr5 54368410 54371480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1823 14 591 Receptor kinase-like Gene Family AT3G28450 36.153 1.36e-109 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Ssu5g1823 PK_Tyr_Ser-Thr 8e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1823 - - gmx:102664092 937.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1823 5 54368410 54371480 Ssu1g0298 1 7055670 7057732 PCT