Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1822 ATGGAAGTTGCTCTTAGAACAGGAGTTTTCAGCGTTTTTCTACACATCTTGTGGTCAATGCTCGTCTGCTCCAGCATGAGCAACGCAGGTAGCAGTGAACACTATGGAGGATCGCAAGGAACTTCTAACAAGACATTATTTGATCGATCATTTTGGTACAGTTTTGCTATTGGTTATGTTAGTTCAGCAACGGGGGTCACCATTGCTTTTATGTGCTTCTGTGTGCCTTGGGCGCAACTAAAGAAGAGCAAGAGAAGGTTCATATCTTCCAACGTGAGTAGGCGTAAGATTCATGCCGTGGACACAAATCAAGTACCCAAATTGCTCTCTCTATCGTTGCTGGAGAAAGGAAACCAGGAgGTTTCTAGAGTACTCGACAAATTAATATCTAGTATGAGCTTCATGGAACTATGTAAAGCAACTGATTACTTCAACATGACCAATGTTATTGGGGCGGGAAAAACAGGAATGGTGTTCAAGGCCAAGCTTTCTAATGGCTCCCAAGTGGCAGTGAAGAGACTATATGACTCAAAATTATTTGGAACAAAGTTTGCATTAGAAATCATGATTCTGCGGAGATTCAAACATAGAAACTTAGTAGGTCTTCTTGGGTTTTGCAGAGAGAGAAAGCAAAGGATCCTAGTGTATGAATTCATGCCAAATGGTAAACTATCCGATTGGTTGCATCCTTTGCAAAATGAAGCCTTTCCATTGGATTGGCCAATAAGGCTTAAAATAGCACTTGGGTTGGCAAGAGGTTTATCCGGTCTCCACCATAGCTGCAATTGGCAGATACTCCATCTTGGTATAAACTCAGAGCATGTTTTGCTCGATCAGAATTTTGAGCCCAAATTATGGAATTTTAGAAGTGCGAAATTCATCGAAGGAAATCACAAGAACCTAGGGAAGAAGGATGTGTATGATTTCGGAATTGTTCTTTTGGAGCTGATCACAGGAAAGAGATGCATTCAAACGAGTGGATTTTCTAATGTCATTGATGGATCTCTCTTAGGAAAAGGATTCGATGAACAAATCTCTTGTCTCGTCAAGGTTGCAATTGACTGCATTCAGATCTCTCCACACCAGAGGCCAAGTATGCTTGatgtgtataaaaatataaaacgtTTATGGGAAGGATATGAAACTGATGATTGA 1155 0.4026 MEVALRTGVFSVFLHILWSMLVCSSMSNAGSSEHYGGSQGTSNKTLFDRSFWYSFAIGYVSSATGVTIAFMCFCVPWAQLKKSKRRFISSNVSRRKIHAVDTNQVPKLLSLSLLEKGNQEVSRVLDKLISSMSFMELCKATDYFNMTNVIGAGKTGMVFKAKLSNGSQVAVKRLYDSKLFGTKFALEIMILRRFKHRNLVGLLGFCRERKQRILVYEFMPNGKLSDWLHPLQNEAFPLDWPIRLKIALGLARGLSGLHHSCNWQILHLGINSEHVLLDQNFEPKLWNFRSAKFIEGNHKNLGKKDVYDFGIVLLELITGKRCIQTSGFSNVIDGSLLGKGFDEQISCLVKVAIDCIQISPHQRPSMLDVYKNIKRLWEGYETDD 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1822 384 SUPERFAMILY Protein kinase-like (PK-like) 125 371 IPR011009 -
Ssu5g1822 384 PANTHER RECEPTOR-LIKE PROTEIN 55 39 378 - -
Ssu5g1822 384 Gene3D Phosphorylase Kinase; domain 1 108 218 - -
Ssu5g1822 384 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 39 378 - -
Ssu5g1822 384 Pfam Protein kinase domain 146 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1822 384 ProSitePatterns Protein kinases ATP-binding region signature. 150 172 IPR017441 GO:0005524
Ssu5g1822 384 ProSiteProfiles Protein kinase domain profile. 144 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1822 384 Gene3D Transferase(Phosphotransferase) domain 1 219 303 - -
Ssu5g1822 384 Gene3D Transferase(Phosphotransferase) domain 1 304 383 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1822 Ssu-Chr5 54352177 54354333 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1822 124 383 Receptor kinase-like Gene Family AT4G39400 34.323 1.21e-45 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu5g1822 Pkinase 1.2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1822 - - vra:106766350 589.341