Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1812 ATGAACTGTCCTaacttgacttttataataggAATTTGCATAGGCTTTGTGGTTGGAGTGGGTTCGGCAATTTCGATTGTATTCTGCATCATATGTGGAAGGAAACGTACAAAGGTTGAGAAGAGCAATTCTCAGAGTGCGGTGACCATTCCTGTTAATGTCAAAGGGGTTGATTCTAACTCAACATTATCAGAGGGCCAGGAGTCACCCAGAACATCTGAGTGGAGTAACACGCCTTTATGGTTGGAAAGACTTAGTAGGAAGAGTGCAGTGTCAGCATGTGGAATTCCGAAGTATTCTTACAAAGATATACAAAAGGCTACTTCTAATTTCACAACCATCATAGGCAATGGAGCATTTGGTCCTGTTTATAAAGCACAGATGTCTACAAGTGAGACCGTTGCAGTTAAAGTTCTTGGTACTAATTCAAGACAAGGAGAACAGGAATTTTTAAGCGAGGTTTTATTACTTGGAAGATTACATCACAAAAACCTTGTGGATTTGGTGGGATATGTGGCAGAAAGAGGACAACACATGCTTCTTTACACTTACATGAGCAATGGCAGTCTTTCTTCCCATTTGTATGGAAAAAATCATGAGCCATTGAGCTGGGATTTGAGGCTTAGCATAGCACTAGATGTTGCAAGGGGACTGGAATATCTACATTATGGGGCTTCTCCACCTGTTGTGCACCGTGACATAAAATCTTGCAACATACTGTTGGACCAGTCTATGAGAGCCAAGGTCACTGACTTTGGGCTTTCCAGACCCGAGATGATCAAACCTCGCACATCAAATGTCAGAGGAACTTTTGGATATGTTGATCCTGAGTACTTGTCTACAAGAACCTTCACTAAGAAAAGTGATGTTTATAGTTTTGGTGTGCTACTCTTTGAGCTTATCACTGGCAGGAATCCACAGCAAGGGCTCATGGAATATGTAAAACTAGCAGCTATGGAAGGTGAGGGTAAGGTTGGATGGGAAGAAATTGTGGACatgcaattaaatggaaaatatgATTTGCATAATCTTAATGACATGGCTTCACTTGCATTCAAATGTGCTAATGAAGTCTCCAAAAGCCGACCTGCGATGTGCGACATTGTTCATGCACTATCTCAGCTTGGTAAGAAGCCTAGTAAAACTCATAGCCAAACATCTCCTGCTGCATTAAAGGAAGTGTCCATTGAAGTGGACCAGCTTGAAACTCGCGACTTCTCATCAATTGAGAGTCCAAAGATGCTACGCAGATTGCATAGCAGATAA 1266 0.4076 MNCPNLTFIIGICIGFVVGVGSAISIVFCIICGRKRTKVEKSNSQSAVTIPVNVKGVDSNSTLSEGQESPRTSEWSNTPLWLERLSRKSAVSACGIPKYSYKDIQKATSNFTTIIGNGAFGPVYKAQMSTSETVAVKVLGTNSRQGEQEFLSEVLLLGRLHHKNLVDLVGYVAERGQHMLLYTYMSNGSLSSHLYGKNHEPLSWDLRLSIALDVARGLEYLHYGASPPVVHRDIKSCNILLDQSMRAKVTDFGLSRPEMIKPRTSNVRGTFGYVDPEYLSTRTFTKKSDVYSFGVLLFELITGRNPQQGLMEYVKLAAMEGEGKVGWEEIVDMQLNGKYDLHNLNDMASLAFKCANEVSKSRPAMCDIVHALSQLGKKPSKTHSQTSPAALKEVSIEVDQLETRDFSSIESPKMLRRLHSR 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1812 421 ProSiteProfiles Protein kinase domain profile. 109 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1812 421 SMART serkin_6 109 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1812 421 Gene3D Transferase(Phosphotransferase) domain 1 185 399 - -
Ssu5g1812 421 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Ssu5g1812 421 Gene3D Phosphorylase Kinase; domain 1 78 184 - -
Ssu5g1812 421 Pfam Protein tyrosine and serine/threonine kinase 111 372 IPR001245 GO:0004672|GO:0006468
Ssu5g1812 421 CDD STKc_IRAK 115 375 - -
Ssu5g1812 421 PANTHER DUAL-SPECIFICITY KINASE DOMAIN PROTEIN 7 406 - -
Ssu5g1812 421 SUPERFAMILY Protein kinase-like (PK-like) 93 372 IPR011009 -
Ssu5g1812 421 PANTHER OS01G0253100 PROTEIN 7 406 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1812 Ssu-Chr5 54211972 54217076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1812 54 397 Glycoside Hydrolase AT3G07070 40.385 1.03e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Ssu5g1812 PK_Tyr_Ser-Thr 3.8e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1812 - - gmx:100816549 721.465