Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1805 ATGGGACATGTATATGAAGATAGGCTATGCGTGTCTCTAGATGAGTTATGTTTTAATGCTGAAAATGGTAGCAACACGGAAAGGATGAGCAGGAAGAACTATGATTATGACACAAAAATGTTCAAATCCAAGAACCTTGAGACCGAAAGGAGGAGGAGGGAGAAGCTCAGTACCAGGCTTTTGATGCTGCGGTCTTTTGTACCCATCATCACAAATATGAACAAAGCAACCATTGTTGAGGATGCCATCATGTACATCAAGAAGCTGCAAGACACAGTCGACAGCCTCAGACAAGAGCTTCGTGAAATGGAAGCAACATCAGAAGAAATAGCAGAGCCAAAGAAAGATGAATTTGATGCTGCAGAAGAGATGAAAAAATAG 381 0.4147 MGHVYEDRLCVSLDELCFNAENGSNTERMSRKNYDYDTKMFKSKNLETERRRREKLSTRLLMLRSFVPIITNMNKATIVEDAIMYIKKLQDTVDSLRQELREMEATSEEIAEPKKDEFDAAEEMKK 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1805 126 MobiDBLite consensus disorder prediction 104 126 - -
Ssu5g1805 126 Gene3D - 33 106 IPR036638 GO:0046983
Ssu5g1805 126 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 106 IPR036638 GO:0046983
Ssu5g1805 126 PANTHER TRANSCRIPTION FACTOR DYT1 9 126 - -
Ssu5g1805 126 SMART finulus 46 95 IPR011598 GO:0046983
Ssu5g1805 126 Coils Coil 79 106 - -
Ssu5g1805 126 Pfam Helix-loop-helix DNA-binding domain 44 90 IPR011598 GO:0046983
Ssu5g1805 126 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 9 126 - -
Ssu5g1805 126 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 89 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1805 Ssu-Chr5 53939023 53939541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1805 41 126 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 55.319 1.64e-24 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g1805 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1805 - - vun:114186874 161.77