Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1802 ATGGCTGAGGAGTTTCAAGCTAGGATTTGTGGTGAAAACTGGTGGAGTAGTACTATTGATTCAACTAGAAGTGTATTCCCTCTAAGCTCATCATCTATATCTTCTCCTTGTTCCGTGGCAGCTAATGATGCAGGAAACTATAGCACTCGTCAAACTACTGACATAGATTTGAAGGCAACCAAGTATTGTGCTGAAGAGACTACCAATTTGGTTTCTGATAGTTACCTGGGTTTTGTTGATGCACAGAAGCCACATAAGAGTGAATCAGAATCAGCCAGTGGAAGTGGTAGCATATTGATCGATTCCACCTTACAGATGATGGGTTTTGGCCTCACATCTTCAACCTCACAGAATTGGAATCAGCCTCTATTATTTCGTTGTAATGGAAGGGCAGAGAGCAATTTCCATTTAGTGCTTCAGGAAGAAACGGGTATAGATTCTTCTAATTCACAAATTCAGAGGGATTGGATCCCAAAGAGCTTCTCTTCAAGTGGTGGAAACCAAATTGATAATTTCAAGCCATTGAACCAAGAATTTTCCTTAGATCACGAGAGTCTGAGTTCTTTAACCAGCACTGGGTTACCAAATCGTGGTTTCTCAATTGGATCAACCTCATATGGTAACCATTCAACGTTACAAAGCTTATATGACCCTGATCCTCATCCACAACCACAGCACTCACTTTTAACCAACCGTCCCATGTCCTATTCATCAAAAGCAAGTTATGGGACACCCTGCACTGAACTACCGCCAATATGGTCTAAAGTCTCTACTTTTTTGAAGCCCACACCAATTGCAAAGCAACACCCTATTGGACTTCACTTTTCCAACAACACTCCTTTCTGGAATGCTTCGGCTGAGGCACGTAACGACATAAGAGCACGTACTTTTGCTTCTTCACAATCACAATATCAAACGCCAACCTTTGATGAAGAGAAACCCAATTGCCCAAATACTCTATTAAACAAGCTCAACAGTGAGGAAACTCTAGACTCGGCATCAATGGcgaagaaaaatgtttgtgaacCAGCATTGAAGAGGCCAAGAATTGAAACTCCATCTCCGTTACCAACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACCGCATCCGTTCTTCACGAAGCCATTGAGTACATTAAGTTCCTTCATGATCAAGTCAATGTTTTGAGTATTTCATACATGAAAAATGGAGCTCCCATCCAACAGCAGCAGGGCTGTGATGATCCGAAAGACTCAGAAGGACCACAACAAGATTTAAAAAGCCGAGGGCTGTGTTTGGTACCGATTTCAAGCACGTTTCCGGTGGCAACAGAACCCACTACTGCTGAATTGTGGACGCCTACATTCAGAGGCGCACTCTTAAGGTAG 1419 0.4249 MAEEFQARICGENWWSSTIDSTRSVFPLSSSSISSPCSVAANDAGNYSTRQTTDIDLKATKYCAEETTNLVSDSYLGFVDAQKPHKSESESASGSGSILIDSTLQMMGFGLTSSTSQNWNQPLLFRCNGRAESNFHLVLQEETGIDSSNSQIQRDWIPKSFSSSGGNQIDNFKPLNQEFSLDHESLSSLTSTGLPNRGFSIGSTSYGNHSTLQSLYDPDPHPQPQHSLLTNRPMSYSSKASYGTPCTELPPIWSKVSTFLKPTPIAKQHPIGLHFSNNTPFWNASAEARNDIRARTFASSQSQYQTPTFDEEKPNCPNTLLNKLNSEETLDSASMAKKNVCEPALKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSISYMKNGAPIQQQQGCDDPKDSEGPQQDLKSRGLCLVPISSTFPVATEPTTAELWTPTFRGALLR 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1802 472 MobiDBLite consensus disorder prediction 210 234 - -
Ssu5g1802 472 CDD bHLH_AtbHLH_like 356 407 IPR045239 -
Ssu5g1802 472 MobiDBLite consensus disorder prediction 417 436 - -
Ssu5g1802 472 PANTHER TRANSCRIPTION FACTOR BHLH123 28 459 - -
Ssu5g1802 472 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 360 416 IPR036638 GO:0046983
Ssu5g1802 472 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 459 - -
Ssu5g1802 472 Gene3D - 360 421 IPR036638 GO:0046983
Ssu5g1802 472 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1802 Ssu-Chr5 53901242 53904201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1802 1 472 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 37.577 5.31e-63 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1802 - - gmx:100813887 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1802 5 53901242 53904201 Ssu1g0319 1 7542949 7545351 PCT