Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1799 ATGGAGACACATCTCCCCGACCACTTCAAGTGTCCAATTTCCCTCGAGATAATGTCGGACCCCGTAATCCTCTCTTCCGGTCACACCTTCGACCGCTGCTCAATCGAACGTTGGCTCGAGGCCGGCCACCGCACGTGTCCAATTACTAAATTACCCCTCCCGGAACACCCTTCCCTTATTCCCAACCACGCCCTCCGAAGCCTAATCTCCAACTACATCCTCCTCTCCCCTCTCCACCAACCCATTTCCCAACCCGAAACCCTAATTTCAACCCTCGCTTCTCCCTCTTCGTCCGCCGACTCCAAAATTGACTCCCTCCGCCACCTCACGCGCCTCTCCAAGCGCGACCCCGCCTTCCGTCGCCGCCTCGCCGACTCCGGCGCCGTCCCCGCCGTCCTCGCCGCCGTCGGCGACCCCCTCCTCCAGGAGCGCGCCCTCCCGCTCCTCCTCAACCTCACCCTCGACGACGACCTCAAGGTCGGCCTCGTCGCCGAGGGCGTCGTCGCGCGCGTCGTGGCCGTCCTCCTCCTCCGCGGCGCCTCGCCCGACTCCCGCGCTGTGGCGGCCACCATCGTCACGAGCCTCGCCGTGGTGGAGGTCAACAAGGCCACCATCGGCGCGTTCCCGGCGGCGATCGCGGCGCTGGTGGCGATCCTCGGTGACGGCAAGGGGCGGGAGCGGAAGGAGGCCGCCACCGCGCTCTACGCGCTCTGCTCCTATCCGGACAACCGGAGGAGGGCCGTCGACTGCGGCGCGGTGCCGATTCTGCTGCGGAACGTTGAAATTGGGCTCGAACGGGGTGTGGAGGTAATTGGCGTCTTGGCCAAGTGTAAGGAAGGGAGGGAGCACATGGAAGGCTATGACGGTTGTGTTCGGATTCTGGCTCGCGTTTTGAGGAACGGGAGCTCAAGGGGAATTCAGTATGCGCTGTTGGCACTCACTTCGCTTTGTTTTTATAGTCCGCAAATGGTTCTGGTGGCTCTGGAGGATGGGGTTCTGGAAGCTTCTCTTGGGTTCGTCGAAGATGATAATGAGAAAGTGAGGAGGAATGCGTGTAATTTAATTCGGGTTCTGCGTGGCAACAACGTCCACAATCGGGTGAGGGGATGA 1110 0.6198 METHLPDHFKCPISLEIMSDPVILSSGHTFDRCSIERWLEAGHRTCPITKLPLPEHPSLIPNHALRSLISNYILLSPLHQPISQPETLISTLASPSSSADSKIDSLRHLTRLSKRDPAFRRRLADSGAVPAVLAAVGDPLLQERALPLLLNLTLDDDLKVGLVAEGVVARVVAVLLLRGASPDSRAVAATIVTSLAVVEVNKATIGAFPAAIAALVAILGDGKGRERKEAATALYALCSYPDNRRRAVDCGAVPILLRNVEIGLERGVEVIGVLAKCKEGREHMEGYDGCVRILARVLRNGSSRGIQYALLALTSLCFYSPQMVLVALEDGVLEASLGFVEDDNEKVRRNACNLIRVLRGNNVHNRVRG 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1799 369 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Ssu5g1799 369 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 359 - -
Ssu5g1799 369 Gene3D - 84 265 IPR011989 -
Ssu5g1799 369 Gene3D - 266 368 IPR011989 -
Ssu5g1799 369 SUPERFAMILY ARM repeat 86 358 IPR016024 -
Ssu5g1799 369 SUPERFAMILY RING/U-box 3 74 - -
Ssu5g1799 369 CDD RING-Ubox_PUB 9 50 IPR045210 -
Ssu5g1799 369 PANTHER U BOX DOMAIN-CONTAINING 1 359 - -
Ssu5g1799 369 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Ssu5g1799 369 Pfam U-box domain 6 73 IPR003613 GO:0004842|GO:0016567
Ssu5g1799 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1799 Ssu-Chr5 53814008 53815117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1799 1 360 U-box Gene Family AT4G21350 57.682 1.05e-135 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1799 - - gmx:100785141 545.814