Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1796 ATGAGCCGAACTCATAAGCATCACATTTGCCTGCTAAGCTCTTTGATTCTACTCTTCTACAGCTTCTCATTTTGCTCTTGTTCTGATACCATATCTGCTGACAAAGCCATCAGAGATGGCGAGCTTCTTGTTTCCAAAGCCAAAACATTTGCTCTTGGATTCTTCAGTCCAGGCAAGACCAATTCCCGCTATGTGGGAATATGGATTCTGCTTCAACCTATTTGGACCTGTTTCTTCTTCTCAgcaaattacaacaaaaaaacaaaaggtgtAGATGGTAAAAAGAGGATAGTTGCAATTCTGATTGCTTCTGTACTAGCAACAAGTGTCATTCTCCTCTCCTGTGTGTATTACCTGTGGAAGAGAAAAAGCAAAGATAAAGTGATGCAGCATTTAAACCAAGATTCCCCTAGAGAAGAGAACAATGTTCAAAGCAACACACATCCAAATCTCCCCTTTTTCAGCCTTAAAATGATAATCGCGGCCACAAGAAATTTTGGTCATGAGAATAAGCTTGGGCAAGGTGGATTTGGTTGTGTCTATAAGGGCTGCCTAGCCAGTGGGCAAGAGATAGCAGTGAAAAGATTGTCCGAACATTCAGGACAAGGGACAGAAGAGTTTAAAAATGAAGTTACACTATTAGTTAAACTCCAACACAGAAATCTGGTGTGGATTCTTTGGACAGAAGGAAGGGCCTTGGATATAGTTGATTCAACACTGGGTCAGTCTTATCCTCCTGCTCTTGTTCTGAGGTGCATTCAAATTGGATTATTGTGTGTGCAAGAAAATGCCATCAATAGACCATCCATGTTAGAAGTTGTTTTCATGCTAGGCAATGAAACACCTCTTTCCCCACCCCAAAAGCCAGCATTTTTATTCAATGGGAACCAAGATTTGCCTGAGTCATCACCATCAGGAGGAGGGTCTTCAATAAATGAAGTAACAGCAACAACCATCAGTGCTCGCTAA 969 0.4045 MSRTHKHHICLLSSLILLFYSFSFCSCSDTISADKAIRDGELLVSKAKTFALGFFSPGKTNSRYVGIWILLQPIWTCFFFSANYNKKTKGVDGKKRIVAILIASVLATSVILLSCVYYLWKRKSKDKVMQHLNQDSPREENNVQSNTHPNLPFFSLKMIIAATRNFGHENKLGQGGFGCVYKGCLASGQEIAVKRLSEHSGQGTEEFKNEVTLLVKLQHRNLVWILWTEGRALDIVDSTLGQSYPPALVLRCIQIGLLCVQENAINRPSMLEVVFMLGNETPLSPPQKPAFLFNGNQDLPESSPSGGGSSINEVTATTISAR 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1796 322 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Ssu5g1796 322 ProSiteProfiles Protein kinase domain profile. 166 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1796 322 PANTHER GLYCOPROTEIN S13, PUTATIVE-RELATED 223 319 - -
Ssu5g1796 322 Gene3D Phosphorylase Kinase; domain 1 125 227 - -
Ssu5g1796 322 Pfam Protein kinase domain 169 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1796 322 ProSitePatterns Protein kinases ATP-binding region signature. 172 194 IPR017441 GO:0005524
Ssu5g1796 322 SUPERFAMILY Protein kinase-like (PK-like) 140 226 IPR011009 -
Ssu5g1796 322 MobiDBLite consensus disorder prediction 287 322 - -
Ssu5g1796 322 PANTHER GLYCOPROTEIN S13, PUTATIVE-RELATED 12 87 - -
Ssu5g1796 322 PANTHER GLYCOPROTEIN S13, PUTATIVE-RELATED 131 226 - -
Ssu5g1796 322 PANTHER - 12 87 - -
Ssu5g1796 322 PANTHER - 131 226 - -
Ssu5g1796 322 MobiDBLite consensus disorder prediction 296 322 - -
Ssu5g1796 322 PANTHER - 223 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1796 Ssu-Chr5 53746569 53751205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1796 83 226 Receptor kinase-like Gene Family AT4G04500 46.528 3.61e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu5g1796 Pkinase 8.1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1796 - - aprc:113859914 223.402