Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1793 ATGAATGAGGGAGTGTTTTCAAGTAACAGAGAGCAGTCGGGTGAAAGTAACATGGACGAGCTAGAGTTGCCATTGTTTGATTTTAACACCATAACAATGGCTACAAACAACTTCTCTGAAGAAAATAAACTTGGACAAGGAGGCTTTGGTAGTGTTTACAAAGGCAGGTTGATGGAAGGTCAGGACATTGCTGTGAAGAGATTATCAAAAAATTCTGGGCAAGGAATTGAAGAGTTTAAGAATGAGGTCAAGTTAATTGTCAAGCTTCAACATCGAAATCTTGTTCGGCTGCTTGGTTGCAGCATTCAGATGGATGAGAAGATGCTAGTGTATGAGTACATGGAAAATAGAAGCCTTGATGCCATTTTGTTTGacaaagaaaaaagatctTCACTGGACTGGCAAAGGCGCTTCAGCATTATATGTGGAATAGCTAGAGGGCTTCTTTATTTGCACCAAGATTCCAGATTTAGGATCATCCATAGGGATCTCAAGGCAAGCAACATTCTACTTGACAAAGAGATGAACCCAAAGATTTCAGACTTTGGGATGGCTAGAATTTTTGGCACAGATCAGACAGAGGCAAATACCATGAGAGTTGTTGGAACATATGGCTACATGTCCCCTGAATATGCTATGGATGGGATCTTCTCAGTAAAATCTGATGTTTTTAGCTTTGGGGTTCTTGTGCTGGAGATCGTGAGTGGAAAAAAGAACAGAGGATTCTATTAcgccaacaaagaattgaatcTTCTAGGGCATGCGTGGAGGCTGTGCAAAGAAGGAAATGCTTTGGAACTGATTGATTCGTCTATTGACAAATCATATTCCCCATCTGAAGTTCATAGATGCATACAGGTCGGGCTCTTATGCGTGCAAGAGCGTGCAGAAGATAGGCCAACAATGTCTTCAGTGGTCTTGATGCTGAGTAGTGACACTGCATCAATGTCACAACCCAGAAACCCCGGGTTTTGTCTAGGAAGGAATCCTATGGAAACTGATTCTTCTTCAAGTAAACAAGATGAATCATGCTCTGTGAACCAAGTCACTGTCACAATGCTAGATGCCAGGTAG 1074 0.405 MNEGVFSSNREQSGESNMDELELPLFDFNTITMATNNFSEENKLGQGGFGSVYKGRLMEGQDIAVKRLSKNSGQGIEEFKNEVKLIVKLQHRNLVRLLGCSIQMDEKMLVYEYMENRSLDAILFDKEKRSSLDWQRRFSIICGIARGLLYLHQDSRFRIIHRDLKASNILLDKEMNPKISDFGMARIFGTDQTEANTMRVVGTYGYMSPEYAMDGIFSVKSDVFSFGVLVLEIVSGKKNRGFYYANKELNLLGHAWRLCKEGNALELIDSSIDKSYSPSEVHRCIQVGLLCVQERAEDRPTMSSVVLMLSSDTASMSQPRNPGFCLGRNPMETDSSSSKQDESCSVNQVTVTMLDAR 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1793 357 PIRSF ILK 24 322 - -
Ssu5g1793 357 Pfam Domain of unknown function (DUF3403) 311 357 IPR021820 GO:0004674
Ssu5g1793 357 ProSiteProfiles Protein kinase domain profile. 38 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1793 357 SUPERFAMILY Protein kinase-like (PK-like) 16 309 IPR011009 -
Ssu5g1793 357 PANTHER - 4 356 - -
Ssu5g1793 357 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 4 356 - -
Ssu5g1793 357 CDD STKc_IRAK 44 309 - -
Ssu5g1793 357 ProSitePatterns Protein kinases ATP-binding region signature. 44 66 IPR017441 GO:0005524
Ssu5g1793 357 SMART serkin_6 38 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1793 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Ssu5g1793 357 Gene3D Phosphorylase Kinase; domain 1 12 113 - -
Ssu5g1793 357 Pfam Protein tyrosine and serine/threonine kinase 41 307 IPR001245 GO:0004672|GO:0006468
Ssu5g1793 357 Gene3D Transferase(Phosphotransferase) domain 1 114 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1793 Ssu-Chr5 53627297 53628903 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1793 26 357 Receptor kinase-like Gene Family AT4G11530 58.457 9.57e-142 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu5g1793 PK_Tyr_Ser-Thr 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1793 - - gmx:106799702 660.988