Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1792 ATGGGAGGTTCCAGAAACCTCCtcactttcttcctttttgGCTTCACCACTTTACTCGCTCTCTTCCCCACACTCTCAATCTCCGCAGACACCTTAACCACATCCCAATTCCTCCGAACCAACCAAACCCTCCTCTCACCAAACGCAATTTTCGAGCTGGGTTTCTTTTCCTACACCAACTCCACCTGGTACTTGGGCACATGGTACAAAACCATCCACGACAGAGATAGAACAGTGGTGTGGGTGGCAAACAGAGACGCCCCACTCGAGAACTCCACCGGGTTTCTCAAAATAGGCGACAAAGGCAACCTCGTCATCATAGACCAATCCCAGAAAATCGTGTGGTCCATGAATCAAACcacaacaaccaacaacaacaacccaGTTCTTCAGCTTTTGGATTCCGGGAACCTGGTTCTCAAAGAAGCAAACGAGAACGACCCCGCGAAGTTTCTCTGGCAGAGCTTCGATTACCCGACAGATACCTTGTTACCCGGCATGAAACTAGGTTGGAACTTCGACACGGGCGTGGAGAAACACATAACCTCGTGGAGGGTCACAAACCAAGACCCTTCAAGCGGGGATTTTTCTTTCAAGCTCGATTACCGTGGCCTCCCCGAAATCTTCCTCTGGAACAAGAACCAGAGAATCTACCGAAGCGGGCCTTGGAATGGCGAGAGATTCAGCGGGGTACCCGAGATGCAACCCGTCACAGATTCCATTAAATTCACGTTCTTCGTGGGTCAACACGAGGTGTACTACACGTTCTCAATTGGGAACCAGTCCTTGTTCTCGAGACTCTCCGTGAGCCCCGTCGGGGAACTCCAACGCCTCACGTGGATTCAGAGCAGCCAGCTGTGGAACAAATTCTGGTACGCGCCGAAAGACCAATGCGACAACTACCGAGAGTGCGGTCCGTACGGGGTCTGTGACACGAACGCGTCACCGGTGTGTCAGTGTGTCAGAGGGTTCCGACCGAAGAACCGGCAGGCGTGGAATTTGCGCGATGGCTCTGACGGGTGCGTGCGGAACACGGAGTTGGGGTGTGGGAGTGACGGGTTTTTGCACGTGGAAAACGTGAAGCTGCCCGAGACGACCACGGTGTTCGTGAACAGGAGCATGGGTCTCGTGGAGTGCGGGGATTTGTGCCGGAGGAATTGTTCGTGCACTGCTTATGCGAATATTGAGATCGCGAATGGAGGAAGTGGGTGCGTGATGTGGGTCGGGGAGCTCTTGGACGTGAGGCGCTACGCGCGGGAGGGCAAGATCTGTATGTCAGATTAG 1284 0.5218 MGGSRNLLTFFLFGFTTLLALFPTLSISADTLTTSQFLRTNQTLLSPNAIFELGFFSYTNSTWYLGTWYKTIHDRDRTVVWVANRDAPLENSTGFLKIGDKGNLVIIDQSQKIVWSMNQTTTTNNNNPVLQLLDSGNLVLKEANENDPAKFLWQSFDYPTDTLLPGMKLGWNFDTGVEKHITSWRVTNQDPSSGDFSFKLDYRGLPEIFLWNKNQRIYRSGPWNGERFSGVPEMQPVTDSIKFTFFVGQHEVYYTFSIGNQSLFSRLSVSPVGELQRLTWIQSSQLWNKFWYAPKDQCDNYRECGPYGVCDTNASPVCQCVRGFRPKNRQAWNLRDGSDGCVRNTELGCGSDGFLHVENVKLPETTTVFVNRSMGLVECGDLCRRNCSCTAYANIEIANGGSGCVMWVGELLDVRRYAREGKICMSD 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1792 427 Pfam S-locus glycoprotein domain 218 328 IPR000858 GO:0048544
Ssu5g1792 427 PANTHER - 16 420 - -
Ssu5g1792 427 Pfam PAN-like domain 349 414 IPR003609 -
Ssu5g1792 427 SMART blect_4 35 159 IPR001480 -
Ssu5g1792 427 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 420 - -
Ssu5g1792 427 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 225 IPR036426 -
Ssu5g1792 427 CDD EGF_CA 296 328 - -
Ssu5g1792 427 PIRSF SLG 6 425 IPR035446 -
Ssu5g1792 427 Pfam D-mannose binding lectin 78 185 IPR001480 -
Ssu5g1792 427 Gene3D - 24 156 IPR036426 -
Ssu5g1792 427 SMART ntp_6 349 427 IPR003609 -
Ssu5g1792 427 CDD PAN_AP_plant 345 421 - -
Ssu5g1792 427 ProSiteProfiles Bulb-type lectin domain profile. 29 153 IPR001480 -
Ssu5g1792 427 CDD B_lectin 35 159 IPR001480 -
Ssu5g1792 427 ProSiteProfiles PAN/Apple domain profile. 349 427 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1792 Ssu-Chr5 53619458 53620741 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1792 - - aprc:113860154 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g0327 1 7721006 7724670 Ssu5g1792 5 53619458 53620741 PCT