Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1788 ATGACGTCACACTCACACTACCCCCCCGAGTTAGACGCCGACTCCGTCACCTCCTCCCCTCGCTCCGACCACTTCCACGACGCGCCGCCGCGCGTCCGCTTCATGTGCAGCTTCGGCGGCAAGATCCTCCCCCGCCCCCACGACAACCAGCTCCGCTACGTCGGCGGCGACACCCGCATCTTCGCCGTCCACCGCTCCATCTCCTTCTCCGCCCTCATTCTAAAACTCTCCAAGCTCTCAGGCATGAGCAACATAACCGCGAAGTACCAGCTCCCGAACGAGGATCTGGACGCGTTGATCTCCGTGACGACGGACGAAGACGTGGAGAACATGATGGACGAGTACGACCGCGTGGCACAGAATCACAACCCGCGATCGGCGCGGCTTCGGCTCTTCCTCTTCCCCGAAGGGGAAGATTCCCGAGCTAGCAGCATCAGCTCGCTCTTAAACGGCTCGGCCAAACGCGAGAACTGGTTCCTCGACGCCTTAAACGGCGGCGTTTCGGGGCTCGAGCGAGGCCGCTCCGATGCCTCTTCCATGGTCTCGGAAGTACCCGATTACCTCTTCGGGTTAGATAACTCCGAAGAAACACACCAACGCGAACCGCGACCCAAGGACCGACCCGTTCTAAACGACAACGTGTCCGTTTCGGATCCGGGTTCACCCGCCCCAGTTGCCTCGTCCCCGTATTATTCCACATCATCAGTGCCCTGCGTGTCTTCTATCCCTAACCTTCCCCCGGTTAAAACCAAACCCGCAAAGCCGGTTCCTGATACGGACTCCAAGGAAAATCAAATCGAACCTGAAACGGGTGAACAACCGAACCCGAACCTGTACCCGAGTAATTCTGTGATACACTACCCTCCACCCCCAGAAGCTGCTTATTCGGGTCATTCCATACAACCGGTTCCTGTTTTCTATGTTTCCGGTCCGGTTCGACCGGGAACCGTGCCGGTTCCTATGCAGACATCTTATCCCTACGTTCAACAACCATATCATGCAGTGGTGCCATCTCAGGTTCCAATCGGGTACCATCATTTGGTTCCGGGTTCGGGTCAGGTATATGGTGCAGGCGTGAGACACGTGACCCCTCTGCAGCCTTACAGTCCTTCCCCCGCGGTGGTTCACGACGGTTTGAAGCAGCACGTGTATCATGCCGTGCCCAATTCCTGTCCGGTTCCGGTTCACCCGGTGATGGCGATGCCGGGTGGGGAGGAACCGCAGAGAGGTGGAGCGGAGTTTGTGGCGGGTCGGGGCACCAGCTCGCTAAATAACTGA 1278 0.5845 MTSHSHYPPELDADSVTSSPRSDHFHDAPPRVRFMCSFGGKILPRPHDNQLRYVGGDTRIFAVHRSISFSALILKLSKLSGMSNITAKYQLPNEDLDALISVTTDEDVENMMDEYDRVAQNHNPRSARLRLFLFPEGEDSRASSISSLLNGSAKRENWFLDALNGGVSGLERGRSDASSMVSEVPDYLFGLDNSEETHQREPRPKDRPVLNDNVSVSDPGSPAPVASSPYYSTSSVPCVSSIPNLPPVKTKPAKPVPDTDSKENQIEPETGEQPNPNLYPSNSVIHYPPPPEAAYSGHSIQPVPVFYVSGPVRPGTVPVPMQTSYPYVQQPYHAVVPSQVPIGYHHLVPGSGQVYGAGVRHVTPLQPYSPSPAVVHDGLKQHVYHAVPNSCPVPVHPVMAMPGGEEPQRGGAEFVAGRGTSSLNN 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1788 425 SMART PB1_new 46 136 IPR000270 GO:0005515
Ssu5g1788 425 SUPERFAMILY CAD & PB1 domains 47 143 - -
Ssu5g1788 425 MobiDBLite consensus disorder prediction 405 425 - -
Ssu5g1788 425 MobiDBLite consensus disorder prediction 192 293 - -
Ssu5g1788 425 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 5 418 - -
Ssu5g1788 425 MobiDBLite consensus disorder prediction 193 208 - -
Ssu5g1788 425 Gene3D - 52 135 - -
Ssu5g1788 425 Pfam PB1 domain 47 135 IPR000270 GO:0005515
Ssu5g1788 425 CDD PB1_UP2 35 134 - -
Ssu5g1788 425 MobiDBLite consensus disorder prediction 268 282 - -
Ssu5g1788 425 MobiDBLite consensus disorder prediction 1 26 - -
Ssu5g1788 425 PANTHER OS05G0427100 PROTEIN-RELATED 5 418 - -
Ssu5g1788 425 MobiDBLite consensus disorder prediction 214 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1788 Ssu-Chr5 53513993 53515366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1788 26 171 MAP Kinase Kinase Kinase AT5G57610 45.270 2.49e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1788 - - aprc:113858359 697.582