Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1787 atgtcGAAAAAACCgaagggagaggaagaggaggagccTCTGCCGGACCACCTCCGCTGCGGCCGCACCGACGGCCGGCAATGGCGGTGCCGGCGGAGAGTGAAGGACAACCTGAAGCTGTGCGAGATTCACTACCTCCAAGGTCGCCATCGCCAGTACAAGGAGAAGGTTCCCGAGTCGTTGAAGCTTCAGCGGAAGCGCAAGCCCAACGAGGAACCTAACGTTCTCGACAATGTCGAATCTAGGGCACGGAGAACCTCGATAATCGCGAAGAAGAAACGCAGGCTTTCGGAAGGTCCGGAGGCGTTGGTCATCGCTGCTTCTTCCTCCgcgaggaagaagaagaaggagttGAAGCGAGGTGATATGCAGTTGGAGCTCATAAGGATGGTTCTGAAGAGAGAGGCTGagaagaagaacaagaacagcaagaagaagaagaagaagaataagaagaaggagaataagaagaaaaaggaggaagaagaagaggaattgtgttatagtaaaGGAGAGTTGAGGAGGGAATTGCCGAATGGGGTGATGGAAATCTCTCCGGCTTCGCCGAATCGTGATTACAACAATGTGGGTTCGCATTGTGATGTGAAAGTGGGTGTTGATTGCAGAACCGTTACTCCGCGTTACTTTAGGTCCAAGAATGTTGACAGGGTCCCTGTGGGGAAGTTGCAGATTGTGCCGTATGGGTCAAACTTGACGAAGGGTAAGAGGAAGAAGTGTCATTGGTGCCAGAGAAGTGATTCCTTGAATCTCATTCAGTGTTCAAGCTGTCGGAGGGAGTTTTTCTGCATGGATTGCGTCAAAGAACGGTATTTTGACACTCAAAATGAAGTTAAGAAGGCATGTCCAGTTTGTCGTGGAACTTGCACTTGTAAGGATTGCTCAGCAAGTAAATGTAGAGACAGTGAAAGTAAGGAATATTTGACTGGTAAAAGCAGAGTTGATAGAATATtgcattttcattatttgatcTGCATGCTCCTTCCAGTACTAAAGCAAATAAATGAAGATCAGAATATTGAGCTAGAAACGgaagcaaaaattaaagGGAAAAATATTTCTGATATTCAAATCAAGCAGGTTGAATTTGGCTGCAATGAGAAAAATTATTGCAATTACTGCAAAACACCCATCTTGGATCTCCATAGAACCTGTCCTAGCTGTTCATATAGCCTATGCTTAAGTTGTTGTCAGGAGTTAAGTCAAGGAAAAACTTGTGGAGAAATTAACTCGTCTACATTCAAGCGACCAGATAAAGTGAAAGCTTGCATCGCTAGTGTGAGCCAAACTTTGGATGAGAAAGCCATATCTAGTGGCAATTTGACTGATACTTCAATATTGCCTGAGTGGACAAATTGGAATGGCATTGACAAGCGTATCATGCCCTCCTACAGAGCTTGGTGGTTGCGGTAA 1431 0.4046 MSKKPKGEEEEEPLPDHLRCGRTDGRQWRCRRRVKDNLKLCEIHYLQGRHRQYKEKVPESLKLQRKRKPNEEPNVLDNVESRARRTSIIAKKKRRLSEGPEALVIAASSSARKKKKELKRGDMQLELIRMVLKREAEKKNKNSKKKKKKNKKKENKKKKEEEEEELCYSKGELRRELPNGVMEISPASPNRDYNNVGSHCDVKVGVDCRTVTPRYFRSKNVDRVPVGKLQIVPYGSNLTKGKRKKCHWCQRSDSLNLIQCSSCRREFFCMDCVKERYFDTQNEVKKACPVCRGTCTCKDCSASKCRDSESKEYLTGKSRVDRILHFHYLICMLLPVLKQINEDQNIELETEAKIKGKNISDIQIKQVEFGCNEKNYCNYCKTPILDLHRTCPSCSYSLCLSCCQELSQGKTCGEINSSTFKRPDKVKACIASVSQTLDEKAISSGNLTDTSILPEWTNWNGIDKRIMPSYRAWWLR 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1787 476 ProSiteProfiles Zinc finger RING-type profile. 246 292 IPR001841 -
Ssu5g1787 476 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 457 IPR045109 GO:0032454|GO:0033169
Ssu5g1787 476 Coils Coil 133 166 - -
Ssu5g1787 476 MobiDBLite consensus disorder prediction 59 79 - -
Ssu5g1787 476 PANTHER PROTEIN B160 9 457 - -
Ssu5g1787 476 MobiDBLite consensus disorder prediction 133 161 - -
Ssu5g1787 476 MobiDBLite consensus disorder prediction 1 22 - -
Ssu5g1787 476 Pfam WRC 15 56 IPR014977 -
Ssu5g1787 476 ProSiteProfiles WRC domain profile. 14 60 IPR014977 -
Ssu5g1787 476 MobiDBLite consensus disorder prediction 139 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1787 Ssu-Chr5 53467713 53470302 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1787 K15601 - gmx:100810673 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1787 5 53467713 53470302 Ssu1g0341 1 8103527 8107862 PCT