Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1786 ATGGAAGTGAAGGCAGAAGAAATTGTTTGCAGCTATGACTTCCCTGAAACTTCAGATAAAAGTTCAAGCTGCTCATTGTGTTTTGACACCGATCACAGTACTAACAGATACAAGCAGTTGCAAGAAGCAGCTCTAAGAGAAGATTCCAATGATAATTACTTGTTTTGTCCCACAGTGTTGGACATCAGTGGTGATAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGCCATCCTGTAGTTGTCCGAGATGTGCTCCAAAGTACATCAAACCTCAGTTGGGATCCACTGATCATGTTCTGTACTTATCTTGAGCAGAGCATTACAAGATATGAGAATAATAAAGACTTGCTTGAATCGTGTTTGGATTGGTGGGAGGTGGAAATTAACATTAGGCAGTATTTTACTGGGTCTGTCAAACGTCGTCCTCAGAGAAACACTTGGCATGAGATGCTGAAACTAAAGGGGTGGCTGTCTTCCCATATATTCAAAGAGCAGTTTCCAGCTCATTTTGCTGAGGTAATTGATGCTCTACCAGTTCAAGAATACATGCACCCCTTGTCTGGTCTTCTGAATTTAGCTGCAAATTTGCCACATGGGAGCGCAAAGCATGACATTGGGCCATATGTCTATATTTCTTATGGCTCTGCTGACAAAGAAACTGATTCTGTGACAAAACTCTGCTATGACTCATATGATGTGGTTAATATTATGACACATACCACGGATGTCCCCCTCTCTACAGAACAgcttacaaaaataagaaagttacTGAAAAAGCACAAAACTCTCTGTCAAATGGAGACTATTGCTACTGAGGAGCTACAAGAACAGAAAGTGAATGGAATGGCATTATTGCATGCTGAAGATACAGAGCGAAAAGGCTTGCAGAGTATGGTTGATGAAGGAATGAACTTTTTCAGGAGAGTCAATAGAACATCTTGCATCTCAACTGAAGTTAAAAAAGTTACTAGTCAGAGCATTGACAGCAATATTTCCCAGAATGGAGAATGTGATTTCTTTTCTGATTCTGATTCTGGGCCTGCTTTACTTCTCCATGCGACTGTTCAAACTACTGAATTGTCTAAACATGACGATCCTAAAAATCCCTTTGAAAGCTcacaaagagataaaaataagtttactgAGCATTTGGGTGCCCAGTGGGATGTCTTTCGTAGACAAGATGTACCAAAGCTCATAGAATACCTTAAAAGACACTATGATGAATTTTCTTATACCCACGACTATCATGAGAAGATGGTTCATCCAATTCTAGATCAGAGCATTTTTCTTGACAGTAGTCACAAAATGAGACTAAAGGAGGAATTTAAGATTGAACCATGGACTTTTCATCAACACGTTGGACAAGCTGTCATTATTCCTGCCGGATGTCCATACCAGATCAGGAATTCTAAGTCCTGTGTTCATGCGGTATTGGAATTTGTGTCCCCTGAAAATGTTACCGAGGGTATCCGGTTGATTGATGAGGTTCGACTATTGCCTGAAGACCATAAAGCAAAAGCAGACATTCTGGAGGTAAAGAAAATGGCGCTTCATAGCATGAATACAGCAATTAAAGAAGTACGTCAGCTAACAAGCAAAACATGA 1611 0.3929 MEVKAEEIVCSYDFPETSDKSSSCSLCFDTDHSTNRYKQLQEAALREDSNDNYLFCPTVLDISGDNFEHFQKHWGKGHPVVVRDVLQSTSNLSWDPLIMFCTYLEQSITRYENNKDLLESCLDWWEVEINIRQYFTGSVKRRPQRNTWHEMLKLKGWLSSHIFKEQFPAHFAEVIDALPVQEYMHPLSGLLNLAANLPHGSAKHDIGPYVYISYGSADKETDSVTKLCYDSYDVVNIMTHTTDVPLSTEQLTKIRKLLKKHKTLCQMETIATEELQEQKVNGMALLHAEDTERKGLQSMVDEGMNFFRRVNRTSCISTEVKKVTSQSIDSNISQNGECDFFSDSDSGPALLLHATVQTTELSKHDDPKNPFESSQRDKNKFTEHLGAQWDVFRRQDVPKLIEYLKRHYDEFSYTHDYHEKMVHPILDQSIFLDSSHKMRLKEEFKIEPWTFHQHVGQAVIIPAGCPYQIRNSKSCVHAVLEFVSPENVTEGIRLIDEVRLLPEDHKAKADILEVKKMALHSMNTAIKEVRQLTSKT 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1786 536 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 535 IPR045109 GO:0032454|GO:0033169
Ssu5g1786 536 Gene3D Cupin 57 302 - -
Ssu5g1786 536 Gene3D Cupin 342 508 - -
Ssu5g1786 536 SMART cupin_9 167 499 IPR003347 -
Ssu5g1786 536 ProSiteProfiles JmjC domain profile. 186 499 IPR003347 -
Ssu5g1786 536 Pfam JmjC domain, hydroxylase 385 477 IPR003347 -
Ssu5g1786 536 PANTHER PROTEIN B160 1 535 - -
Ssu5g1786 536 SUPERFAMILY Clavaminate synthase-like 66 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1786 Ssu-Chr5 53464432 53467663 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu5g1786 JmjC 5.7e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1786 K15601 - gmx:100810673 996.112