Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1783 ATGGGGAGATCACCTTGTTGTGAAAAGAATGGCCTCAAGAAAGGACCATGGACACCAGAGGAAGACCAGAAACTCATCGATTACATTCAGAAACATGGGTACGGCAATTGGAGGATACTCCCAAAGAATGCTGGGTTGCAAAGGTGTGGAAAGAGTTGCCGACTCCGTTGGACAAACTATCTCCGACCAGATATAAAGCGAGGTCGATTCTCTTTTGAAGAGGAGGAGACGATAATACAGCTACATAGCATTCTTGGCAACAAGTGGTCAGCTATTGCATCTCGCTTGCCCGGAAGAACAGACAACGAAATTAAGAATTACTGGAATACCCACATTAGAAAAAGGCTCCTAAGGATGGGAATTGATCCTGTGACACATAGGCCAAGGCTTGATCTTTTGGACCTCTCTTCCATCCTAAGTTCATCCCTCTACGGCTCATCACAAATGAACATCCAAAGACTTCTTGGCACGCAGACAGTGTTGAACCCTGAGCTTCTGAAGTTGGCTTCATCACTCTTTTCCTCTCAGCAACGTGAACACCTAAACATGTGTGCACCAAATGGGGAAGAGAACCAGCTCTGTGATCCCCAGATTCAGAACCAAATCCAACACTTGGTACAAACTCAGGACCTGGCTGAAGAAGCATGTAAAACAGCTTTGCCTTCACTCAAGCACAGTTCGTTGAATCCAATGTGA 696 0.4569 MGRSPCCEKNGLKKGPWTPEEDQKLIDYIQKHGYGNWRILPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHRPRLDLLDLSSILSSSLYGSSQMNIQRLLGTQTVLNPELLKLASSLFSSQQREHLNMCAPNGEENQLCDPQIQNQIQHLVQTQDLAEEACKTALPSLKHSSLNPM 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1783 231 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Ssu5g1783 231 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu5g1783 231 CDD SANT 69 112 IPR001005 -
Ssu5g1783 231 Gene3D - 13 66 - -
Ssu5g1783 231 Gene3D - 69 116 - -
Ssu5g1783 231 CDD SANT 16 61 IPR001005 -
Ssu5g1783 231 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ssu5g1783 231 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu5g1783 231 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Ssu5g1783 231 PANTHER PROTEIN ODORANT1-LIKE 1 211 - -
Ssu5g1783 231 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 211 - -
Ssu5g1783 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Ssu5g1783 231 SMART sant 13 63 IPR001005 -
Ssu5g1783 231 SMART sant 66 114 IPR001005 -
Ssu5g1783 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1783 Ssu-Chr5 53406876 53407851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1783 1 181 MYB Transcription Factor Family AT4G21440 79.581 3.26e-111 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu5g1783 Myb_DNA-binding 3.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1783 K09422 - gmx:100810143 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1783 5 53406876 53407851 Ssu5g1783 5 53406876 53407851 ECH
Ssu5g1783 5 53406876 53407851 Ssu1g0343 1 8170909 8172248 PCT