Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1778 ATGCGGAGTTTCACTTTCTTCGAACGAGTTTCTAGAGCCTTCCGTGACCATGGGTCCAACTTGAAGCTTGTACTCCTCTGCACCACCGTAAGTGGTGGAGGGGTTTTGGCTTACGGAGAGGCTGTTGCGGCATCTGAAGCGGCGGTGACGGAGAAGAAAAAAGTGGTGGTGCTGGGAACAGGGTGGGCAGGCACGAGTTTCTTGAGGAATCTGAACAATCCCAGATATGAGGTTCACGTGGTCTCGCCTCGCAATTATTTTGCATTCACTCCTTTGCTGCCTAGTGTTACCTGCGGCACCGTCGAAGCGCGCAGCATTGTTGAACCCGTCCGCAATATATTTAGAAAGAAAAAGATGGACGTTCAATTCAGTGAAGCAGAATGTCTCAGGATTGACGCAGCAAACAGGAAGGTTTACTGTCgatctaatataaataataatttgaacgAGAAAGAAGAATTTGTGGTGGACTATGACTACCTAATCATAGCCGTGGGAGCAAATGTCAACACATTTAATACTCCCGGAGTGATGGAGAATTGCCATTTCTTGAAGGAAGTTGAAGATGCACAGAAAATTAGAAGAACCGTTATTGACTGCTTTGAGAGAGCAAGTTTGCCTTGTGTaagtgaagaagaaaagaagagaattcTTCATTTTGCCATTGTTGGAGGTGGTCCAACTGGAGTGGAGTTTGCAGCTTCACTACATGACTTTGTCACTGAGGATTTGGTCAAGTTATATCCCGGGATAAaagatttagttaaaattacGCTTCTGGAGGCTGGAGATCATATTTTGAGCATGTTTGACAAAAGAATCACTGCTTTTGCTGAAGACAAGTTCGGAAGAGATGGTATTCATGTAAAAACAGGATCCATGGTCGTGAAGACTAACAGACGTGCCATAGCTACTGATGAATGGTTGAGAGTTGAAGCAACTAACAACGTGTATGCACTTGGTGATTGTGCTACAATAAACCAGCGAAAAGTCATGGAAGATATTGCGGCAATATTTAAGAAGGCAGACAAAGACAATTCAGGAACTCTTACTGTCAAAGAATTTCAGGAGGTATTGGATGACATCTGCGAAAGATACCCTCAGGTGGAGCTATATCTAAAGAGTAAACAGATGCACGACATTGCTGATTTGTTGAAAGAGTCCAAGGGAGATGTTGAAAAAGAATCTATTGAACTGAATATCGTAGAACTCAAAACCGCACTCTCTAAAGTGGATTCTCAGATGAAATTTCTTCCTGCAACAGCGCAGGTTGCGTCTCAGCAAGGCACCTACCTGGCCAAGTGCTTTAACCGGATGGAAGAGTGTGAAAAAAATCCCGAGGGTCCTATCAGGTTCAGGGGCGAAGGGCGCCATCGCTTCAAACCCTTTAGGTACAAGCATTTAGGTCAGTTCGCTCCTCTGGGAGGAGAGCAGACAGCTGCACAGCTTCCTGGGGATTGGGTTTCAATTGGACAAAGCACTCAATGGCTGTGGTATTCTGTCTATGCAAGCAAGCAAGTCAGCTGGCGCACCAGGGCGTTAGTAGTATCAGACTGGACAAGACGCTTTATTTTTGGGAGGGACTCAAGTCAAATCTGA 1599 0.4371 MRSFTFFERVSRAFRDHGSNLKLVLLCTTVSGGGVLAYGEAVAASEAAVTEKKKVVVLGTGWAGTSFLRNLNNPRYEVHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIFRKKKMDVQFSEAECLRIDAANRKVYCRSNINNNLNEKEEFVVDYDYLIIAVGANVNTFNTPGVMENCHFLKEVEDAQKIRRTVIDCFERASLPCVSEEEKKRILHFAIVGGGPTGVEFAASLHDFVTEDLVKLYPGIKDLVKITLLEAGDHILSMFDKRITAFAEDKFGRDGIHVKTGSMVVKTNRRAIATDEWLRVEATNNVYALGDCATINQRKVMEDIAAIFKKADKDNSGTLTVKEFQEVLDDICERYPQVELYLKSKQMHDIADLLKESKGDVEKESIELNIVELKTALSKVDSQMKFLPATAQVASQQGTYLAKCFNRMEECEKNPEGPIRFRGEGRHRFKPFRYKHLGQFAPLGGEQTAAQLPGDWVSIGQSTQWLWYSVYASKQVSWRTRALVVSDWTRRFIFGRDSSQI 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1778 532 SUPERFAMILY EF-hand 299 375 IPR011992 -
Ssu5g1778 532 Gene3D - 43 297 - -
Ssu5g1778 532 Gene3D - 378 531 - -
Ssu5g1778 532 ProSitePatterns EF-hand calcium-binding domain. 343 355 IPR018247 -
Ssu5g1778 532 PANTHER NAD(P)H DEHYDROGENASE B2 3 299 - -
Ssu5g1778 532 PANTHER NADH DEHYDROGENASE 298 532 IPR045024 GO:0003954|GO:0006116
Ssu5g1778 532 SUPERFAMILY FAD/NAD(P)-binding domain 52 271 IPR036188 -
Ssu5g1778 532 ProSiteProfiles EF-hand calcium-binding domain profile. 330 365 IPR002048 GO:0005509
Ssu5g1778 532 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Ssu5g1778 532 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Ssu5g1778 532 PRINTS FAD-dependent pyridine nucleotide reductase signature 28 47 - -
Ssu5g1778 532 SMART efh_1 334 362 IPR002048 GO:0005509
Ssu5g1778 532 Gene3D - 298 343 - -
Ssu5g1778 532 PANTHER NADH DEHYDROGENASE 3 299 IPR045024 GO:0003954|GO:0006116
Ssu5g1778 532 PANTHER NAD(P)H DEHYDROGENASE B2 298 532 - -
Ssu5g1778 532 Pfam Pyridine nucleotide-disulphide oxidoreductase 53 299 IPR023753 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1778 Ssu-Chr5 53080565 53085320 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1778 1 532 EF-hand Containing Proteins AT4G05020 65.539 0.0 787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1778 K03885 - gmx:100809915 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1778 5 53080565 53085320 Ssu1g0349 1 8248637 8255073 PCT