Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1770 ATGCACGGGAGGTACGTGGAGAGATCGAGCGGCGTGGCGCGAGAGAAGCGCGGTTTGGATGCCGCTTCTGCGGAAGAAGGTCAGCCTGATCGGAAACGACCTGCCTTGGCTAGTGTAATTGTTGAAGCCCTGAAGGTGGATAGTCTGCAGAAACTTTGCTCATCATTGGAGCCTGTTCTACGCAGAGTTGTTAGTGAAGAAGTCGAGCGTGCATTGGCAAAACTAAGCCCTGCCAAGCTTACTGgcagGTCTTCTTCTCCGAAGCGAATAGAAGGCCCTGATGGCAAAAATTTACAATTGCACTTCAAGACCAGGCTGTCGCTGCCTCTCTTTACTGGTGGGAAAGTGGAGGGAGAGCAAGGAGCAGCCATACatattgttttgattgatgCAAACACAGGCCATGTTGTCACATCAGGGCCAGAGTCGTGTGTCAAACTAGATGTTATTGTACTAGAGGGAGATTTCAATAATGAGGATGATGATAATTGGAATGAAGAAGAATTTGATAGTCATGTTGTGAAAGAGCGGGAAGGAAAAAGGCCTCTTCTAACTGGTGATCTGCAAATCACACTGAAGGATGGTGTAGGAACACTGGGTGAGCTTACATTTACAGACAACTCTAGCTGGATAAGGAGTAGGAAGTTCCGATTGGGCCTAAAAGTTGCCTCAGGTTGTTGTGAGGCAATGCGTATTCGTGAAGCCAAATCAGAACCTTTCACTGTTAAGGATCACCGTGGAGAATTATACAAGAAACACTACCCCCCTGCCTTGAATGATGAGGTCTGGAGACTGGAGAAGATTGGCAAGGATGGGTCATTTCACAAAAGGCTAAATAAAGCTGGAATATTTACTGTTGAAGACTTCCTAAGACTTGTGGTCAGAGACCCTCAGAGACTGCGGAATATTCTTGGGAGCGGCATGTCAAATAAGATGTGGGATGTTCTTGTCGAGCATGCAAAGACTTGTGTTCTCAGTGGAAAACTTTATGTATACTATCCTGATGATGCAAGAAATGTGGGTGttgttttcaataatatttatgaattaagtGGCCTGATTGCCAATGACCAATATTACTCAGCCGATTCTCTCTCTGAGAGTCAAAAGATTTATGTAGACACTTTGGTGAAGAAGGCATATGATAATTGGATGCATGTTATTGAGTATGATGGGAAGTCTCTGCTAAATGACAATCAGGATAAGACTTTGGATACCGCTCATCCTCAAGCTCCAATGACTTCCCATGAATATTCAAACTCACTTCAGCAGATATCCATCCCAACTTTGCCCCTTCCAGTACATGCTGGCCAGCCTTCAATGGATTCAGGAGTAACAGTTGGAGGTTATCATGATGGGACAACTTCCAGATTCTCCTTGCAACCACAGAATCATAATCTTAATTCTTCCATTCAATTTGATGATAATGCATTCCCACTACAAAACCAGTTGATGAGTGTTTCACACCATGCCCAACTTCCCAGAAATGAAAATGGGCTGACTCTTGGTCCTCCACAATCATCCCCACATTGCTTCGAGACTGCCAGCATTTCAAATCCTACTTATAGAGGAGTTGAAGAGTACTTCCCTGAGGAGGAAATTCGTCTTAGAAGCCATGAGATGCTAGAAAATGAAGATATGCAGCATCTGCTCCGTATTTTTAACATGGGATGCCAACCAAATCCTTCCTTTAATGCCCCCGAAGATGGATACCCTAGTTCGTCTACATACATTTCTGCAAACCCCGTGGGCTACAATTTTGATGATGAACCAAACCGTTCCTCAGGCAAAGCTGTTGTGGGCTGGCTCAAGCTTAAGGCAGCTTTAAGATGGGGTATTTTTATTCGGAAGCAGGCTGCTGAGAGACGGGCGCAACTCGTTGAATTGGATGACCCGTAG 1899 0.4413 MHGRYVERSSGVAREKRGLDAASAEEGQPDRKRPALASVIVEALKVDSLQKLCSSLEPVLRRVVSEEVERALAKLSPAKLTGRSSSPKRIEGPDGKNLQLHFKTRLSLPLFTGGKVEGEQGAAIHIVLIDANTGHVVTSGPESCVKLDVIVLEGDFNNEDDDNWNEEEFDSHVVKEREGKRPLLTGDLQITLKDGVGTLGELTFTDNSSWIRSRKFRLGLKVASGCCEAMRIREAKSEPFTVKDHRGELYKKHYPPALNDEVWRLEKIGKDGSFHKRLNKAGIFTVEDFLRLVVRDPQRLRNILGSGMSNKMWDVLVEHAKTCVLSGKLYVYYPDDARNVGVVFNNIYELSGLIANDQYYSADSLSESQKIYVDTLVKKAYDNWMHVIEYDGKSLLNDNQDKTLDTAHPQAPMTSHEYSNSLQQISIPTLPLPVHAGQPSMDSGVTVGGYHDGTTSRFSLQPQNHNLNSSIQFDDNAFPLQNQLMSVSHHAQLPRNENGLTLGPPQSSPHCFETASISNPTYRGVEEYFPEEEIRLRSHEMLENEDMQHLLRIFNMGCQPNPSFNAPEDGYPSSSTYISANPVGYNFDDEPNRSSGKAVVGWLKLKAALRWGIFIRKQAAERRAQLVELDDP 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1770 632 MobiDBLite consensus disorder prediction 1 32 - -
Ssu5g1770 632 PANTHER OS02G0177800 PROTEIN 1 630 IPR012416 GO:0005516
Ssu5g1770 632 Pfam Calmodulin binding protein central domain 257 323 IPR046830 -
Ssu5g1770 632 PANTHER CALMODULIN-BINDING PROTEIN 1 630 - -
Ssu5g1770 632 Pfam Calmodulin binding protein-like N-terminal domain 98 245 IPR046831 -
Ssu5g1770 632 Pfam Calmodulin binding protein C-terminal domain 328 390 IPR046829 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1770 Ssu-Chr5 52916960 52922211 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1770 14 627 Calmodulin-binding Proteins AT5G57580 62.835 0.0 771
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1770 - - gmx:100812605 1146.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1770 5 52916960 52922211 Ssu1g0356 1 8409943 8412992 PCT