Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1767 ATGAACGACCTATTCTCAAACTCGTTCAAAAAATACACCGACCTGAAGCAGCAGGCGCACCTGGACGACGTGGAGGCCGGGAAGGAAAGCGTGAATCTGGACAAATTCTTTGAAGACGTGGAGAACGTAAAAGAAGACATGAGAACGGTAGAGAAGCTGTACCGAAAACTGCAGGAGGCAAACGAGGAGAGCAAAATCGTGCACAACGCGAAAACCATGAAGGAGCTTCGAGCGCGGATGGACAAAGACGTTGAGCAGGTCCTCAAGCGCGTCAAAGTCATCAAGGGCAAGCTGGAAGCCCTGGAGCGTTCGAACGCCGCAAACCGAAGCGTCCCAGGTTGCGGTCCGGGTTCCTCGGCGGACCGGACCCGAACCTCGGTGGTTAGCGGGTTGGGGAAGAAGCTGAAGGACATGATGGACGACTTCCAAGGGCTGAGGGCGAGGATGCAGATGGAGTACAAGGAAACGGTGGAACGCAGGTACTTCACGGTCACGGGGGAGAAGGCGGACGAGGAGACCATAGAGAACTTGATATCGAGCGGGGAGAGTGAGAGTTTTTTGCAGAGGGCGATTCAGGAGCAAGGGAGGGGTCAGATAATGGACACCATTTCGGAGATTCAGGAGAGGCACGATGCCGTTAAGGAAATAGAGAAGAACTTGATTGAGCTGCATCAGGTGTTCTTGGACATGGCGGCTTTGGTCGAGTCCCAGGGGCAGCAGCTCAATAACATAGAGAGTCACGTGGCGCACGCTAGTTCCTTCGTCAGACGAGGCACCAACCAACTTCAGGAGGCTAGAGAGTATCAGAAGAGTTCCAGGAAGTGGACCTGCTATGCCGTAATTCTTGGCGTTGTCCTCCTCGTTCTCCTACTGTTTCCTCTCTTCACATCGCTCTTGCCTCATTTGTTAAGGTGA 915 0.5355 MNDLFSNSFKKYTDLKQQAHLDDVEAGKESVNLDKFFEDVENVKEDMRTVEKLYRKLQEANEESKIVHNAKTMKELRARMDKDVEQVLKRVKVIKGKLEALERSNAANRSVPGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQGLRARMQMEYKETVERRYFTVTGEKADEETIENLISSGESESFLQRAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQVFLDMAALVESQGQQLNNIESHVAHASSFVRRGTNQLQEAREYQKSSRKWTCYAVILGVVLLVLLLFPLFTSLLPHLLR 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1767 304 SMART SynN_4 28 154 IPR006011 GO:0016020
Ssu5g1767 304 CDD SNARE_syntaxin1-like 202 264 - -
Ssu5g1767 304 MobiDBLite consensus disorder prediction 108 127 - -
Ssu5g1767 304 Coils Coil 40 70 - -
Ssu5g1767 304 Coils Coil 84 104 - -
Ssu5g1767 304 Pfam SNARE domain 240 291 IPR000727 -
Ssu5g1767 304 CDD SynN 33 190 IPR006011 GO:0016020
Ssu5g1767 304 Gene3D - 30 162 - -
Ssu5g1767 304 Gene3D - 194 295 - -
Ssu5g1767 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Ssu5g1767 304 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ssu5g1767 304 PANTHER SYNTAXIN-124-RELATED 6 295 - -
Ssu5g1767 304 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Ssu5g1767 304 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Ssu5g1767 304 PANTHER SYNTAXIN 6 295 IPR045242 -
Ssu5g1767 304 SMART tSNARE_6 198 265 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1767 Ssu-Chr5 52886496 52887410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1767 1 303 SNARE and Associated Proteins AT1G61290 79.538 0.0 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1767 K08486 - gmx:100805869 523.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1767 5 52886496 52887410 Ssu1g0360 1 8567678 8568592 PCT