Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1757 ATGGGTGCGGAGTTGATGGTGACGTGGAGCACTCGGGAGGAGCTTCTCCTCGGTGGAGCTATTCTGAGGCACGGAACCCGAGATTGGACCGTCGTCGCCGCGGAACTCAAAAAACGAACCGTTTCGCCATGCAATTTCACACCCGAGGTCTGTAAAGCCAAATATGAAGAGTTGCAACAGTGGTATTCAGGGTGCACGTCCCTTGAGTTGAAGCTTGAATCCCTTAAGGCTGGGAGGAATGAGAAAACAGATAATTGCCGTGTTGACAATGGCTCCGTTGGACAAGAATTACAAGTTCCTTCGCAGAGATTGGACAGGGTCAAACCTTCCGCGAAAGAGATGTCAAAGGATGGGCTATCTGCTGGGAGTTTCACACATGAAACTCAGACAAACTGGTCTAATGAGTGCCAGGTTCCAGCCACGTCTTGTGAAGATGTGGAGACCAAGCCTGAAGTTTCAGGGTCTACTGAGCAGGAGAAAGTTTTGAATGTAGATAAGTCAGCTCACACTGTATATGAAGGACAGGGAGGGAGTTTGAAAAAACGGAgagggaagagaaagaggaaggaTTGTGGCAGAAATATTAATGAAGTAAGTGTAAGAGAAAGTGATTTTTCGGCTGATGTCTGTAAAGATAGTTCTACCAGCAATTGTGGTGAGACTGTCAAATCTTCTGGCATGAATGAGGAGAATGCAAACATGAAAAAGGATGGAATAAAAGATTTGATGGAGATCTTAGATTCTGTTTTGGTAGTTCAAGGTGCTTCTGCCTTCTGTCGTAGGCTTGATAGCCAGaAGCGAGGAAGATACAAGAAAATGATCCGGCAGCACATGGACTTTGACACTATAAGGTCAAGAATCAGCAACCGAACAATCAAGTCCGCAGTGGAACTTTTGAGAGACTTGATGCTACTGACCAACAATGCTCTAGCATTCTACTCCAAGATCACTCGTGAATACAAAACTGCTCTACTACTTAGAGACCTTGTCATCAAAACATTGAGGGAGAAACTCAAGTGTTTGAGCAGCAGTGTTACTCTTGCCAACACCTCTAGCACATCACCTGTGCATGATCCTGCAGTGAAAGTGAGAAGCATGCACCCCGGTAACCGCAAGATTGTTGCAAAGGTAGCTGGTGGCAGCAGCTCTGCTGAAAGGGTCTCCCTTGGAGCTAAGAAAACTAACAAAGTGGATTCTCCACCTTCAGTGGAATCCTTACCCATCAAGAAGGCTTTTGGTAGAACAAAAAAGGTTGGACGTGAAAATGCAGGTCAGAGACACCCAACAGCAACACCGAGGAAGGAAAACAAAAGAGGGAGAGCAAAGTGA 1329 0.4515 MGAELMVTWSTREELLLGGAILRHGTRDWTVVAAELKKRTVSPCNFTPEVCKAKYEELQQWYSGCTSLELKLESLKAGRNEKTDNCRVDNGSVGQELQVPSQRLDRVKPSAKEMSKDGLSAGSFTHETQTNWSNECQVPATSCEDVETKPEVSGSTEQEKVLNVDKSAHTVYEGQGGSLKKRRGKRKRKDCGRNINEVSVRESDFSADVCKDSSTSNCGETVKSSGMNEENANMKKDGIKDLMEILDSVLVVQGASAFCRRLDSQKRGRYKKMIRQHMDFDTIRSRISNRTIKSAVELLRDLMLLTNNALAFYSKITREYKTALLLRDLVIKTLREKLKCLSSSVTLANTSSTSPVHDPAVKVRSMHPGNRKIVAKVAGGSSSAERVSLGAKKTNKVDSPPSVESLPIKKAFGRTKKVGRENAGQRHPTATPRKENKRGRAK 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1757 442 SMART bromo_6 235 339 IPR001487 GO:0005515
Ssu5g1757 442 PANTHER BROMODOMAIN PROTEIN 67 442 - -
Ssu5g1757 442 PANTHER BROMODOMAIN PROTEIN 1 67 - -
Ssu5g1757 442 CDD SANT 8 58 IPR001005 -
Ssu5g1757 442 ProSiteProfiles Bromodomain profile. 258 320 IPR001487 GO:0005515
Ssu5g1757 442 CDD Bromodomain 239 334 - -
Ssu5g1757 442 Gene3D - 204 348 IPR036427 GO:0005515
Ssu5g1757 442 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 67 442 - -
Ssu5g1757 442 PANTHER BROMODOMAIN-CONTAINING PROTEIN 8 1 67 - -
Ssu5g1757 442 MobiDBLite consensus disorder prediction 103 124 - -
Ssu5g1757 442 MobiDBLite consensus disorder prediction 166 194 - -
Ssu5g1757 442 SUPERFAMILY Bromodomain 233 341 IPR036427 GO:0005515
Ssu5g1757 442 MobiDBLite consensus disorder prediction 410 442 - -
Ssu5g1757 442 MobiDBLite consensus disorder prediction 384 442 - -
Ssu5g1757 442 Pfam Bromodomain 244 323 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1757 Ssu-Chr5 52677465 52682351 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1757 - - pvu:PHAVU_002G224000g 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1757 5 52677465 52682351 Ssu1g0374 1 8739684 8744616 PCT