Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1751 ATGGCGGAGGGTGACGTGGACTTTTCGGAACTGTTCTCTGCTGCTGATGGGGACGATGATGGCATGTTTTATATAGATATTCAGACCGTTCTGAAGGTTCTCGATGAAGCCGATAGTTGTGACCCTCAGGAGAATAGTCCTGAGGATTCTTCATCAAAAAATGTTTCACCTAGTGAATTTGGCATTCATGAAACTGTTCAGATACCAAATGGATCTCAAGTGTTAGAAGAACCACATTTTTCTAGGTTGGACTTTGTGGATTCAGTCACGAGCTGTTCTCCATTCTGCTCAGATGTGTCAGATTCTGGGGCCAGAGGTTCAGTTGGTTTATCTGATTCTGCAGCAAATTCTTTGCTTGACTGTGAACGTGAAAACCAGGGACCTCAATCTCAGGCTTGCTCTTCCCCAAATGCTTTTCCTGGTAATTTCAGTGACTCATTCTCTCCAGGTGAAAGTGATGAGATTTTCTACACAGAAAGGACAGGAGTTTCTAAACATGAGATACCTGCTTATAGTGTGGAAACAAGTTTCCCTGAGGCACAGTCAAACAATATATCAATTTGTGGAGATAATTTGAATCTGAATATGTGGAAGGGTGAAAATGAGAGCCAATTCAAGCATGTGGGAGAGGATGTTGAATCTGAACATGCTTCACTCAGTTCTATTGTTGACAATGGGGATGTAAATATTGAAGATTATGTTGAAGACATCATTGGAGAAGTTTATGGGCAACAGGAAAATGACTCATGTACATCTTTCGAAACATCATTCATGGATGCTGATAGATCTTTGCATGTCGCAACTTCAACTGATTCTACTGTTGGTCAAGGTTCCCATGTTTCCAGTGATTTTGTTGACTACCATCTATCTTCAGATTGTTACCTGGGAACAGATGCTGGACCCTTTGTTGCTGACTCTTTTTATTTGCCTAATGGTATTTGTTCTCAATTGTGGACAAATGAAGAAATGATGAATAACATGAAGGTCGAAAATGCAGAGTTAAATGCTGATCTTGCATGTATGAGTAATGGCATTCCATCAAGCACTACTGGGTCGATATCTTTACAAGATAGTCAAATTATGTTAGCTGATAGTGGTTATCCATCATTTCATTCCGGTAAAGTTATTTTTGATGACATGTCATCCCTGCCTCTTTCAGCTTGTGCTTCATACATGTCATATGGAGACCATcaccaaaacaatttttacaatgtGGATGCTGAGTTCAATCTAGGCCAAGAGGTGAAACAAACACCAGGTATTTTTTCTTCTGTAGGGTGTCAGGCTTACAATTGTTTTAAGAATGAGGATAATTATGCAGTTATAACATCTGAGATATCCAATCAATATCAAGATAGCATTGGTGGAACTGCTAGTGTTCAAGGAAACATGAGCAATTTGAATGCAAAAGCTGCAGATATATCTTGGCCCCATGCCCAAGCACTAATTGCCAGTGAGAAACAGTTTGGTGACGTTAAGAGAGAAGGAGGGGGCAAAATGATTCAACATAAACTTATTGATACTCATCTGTCAAAAGGAACAACTGAGAATTTCCATATTGAGGAAGACCTTGATGTTTGCATTATTGAAGACATCAGTCATCCTGCTCCGACGAGTCGATCTGCAGACAGTGGGAATTCCCTTAATATATCTCAGTCTTCTAGATATGTTGATTCCCAGTCTTACATGGTTGGAAGCACAAGGCTGAAGGCATGTGATGAGCGAAATATATTACGAGTTGCATTGCAGGATTTATCTCAGCCAAAGTCAGAAGTTAGCCCACCAGAAGGATTGTTGGCAGTTCCTCTTTTAAGACATCAGAGAATTGCTTTATCATGGATGgttcaaaaggaaaaatcaagTTGGTATTGCTCAGGAGGAATTCTTGCAGATGATCAGGGACTTGGAAAAACAGTATCAACTATtgcattaatattaaaagagagaCCTCCATTACCTAATGGGTGCACCAATGCCCAAAAAAGTGAATTGAAAACTCTGAATCTTGATGTGGATGATGACGTGCTTCCTCAGAATGGTAGAGTAAAGGAAGAATCTAATATGTGCAAGGATAAGTCAAGTAGATATCCAATCAAGAGCATGAATTTGTTGATGCAAGCAAAGGGAAGGCCATCTGCTGGGACCCTTATTGTTTGCCCCACTAGTGTCCTGCGCCAATGGGCTGAGGAGTTGCGTAGTAAGGTAACTAGTCTGGCAAATCTCTCTGTGCTAGTATACCATGGAAGCAATCGGACAAAAGATCCTTATGAAGTGGCTAAGTATGATGTTGTTCTAACAACTTATTCCATTGTCAGCATGGAGGTTCCTAAGCAGCCTCTATCTGACAAAGATGATGAAGAAAAGGGAAATTTTGAAGATCATGCTGTACCaagtaggaaaagaaaaagcccTTCTAATTCTAGTAAAACTGGCAAGAAGACATTGGATGGCACAATTCTTGAGGCTGTTGCTCGGCCTCTTGCAAAGGTGGCATGGTTTAGGGTTGTCCTGGATGAGGCCCAGAGCATAAAGAATCACAAAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGTGCTAAGCGAAGATGGTGTTTGTCAGGGACTCCCATCCAGAATGCAATCGATGATCTCTACAGTTACTTCAGATTTCTAAGATATGACCCTTATGCTGTCTATACATCATTCTGTTCTTCAATTAAGATCCCGATTAGTAGAAATCCAGCAAAAGGGTATAGAAAGCTACAAGCTGTCTTGAAGACAATAATGTTACGCCGGACAAAAGGCACACTTCTTGATGGGGAACCTATTATTTCCTTGCCGCCTAAATATGTAGAGCtgaaaaaagttgaattttcaATGGAGGAACGTGATTTCTATTCCAGACTAGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTCAAGCAAAATTATGTCAACATTTTGCTGATGCTTCTGCGCCTTAGACAAGCTTGTGATCACCCTTTACTTGTCAAGCGTTACAATTCTAACTCTCTATGGAGATCTTCAGTTGAGGTGGCAAAGAGGCTTCCTCAGGAAAAACAAATCTCTCTTCTGAAATGTTTAGAGGCTTCCTTGGCCCTCTGCGGCATTTGTAATGATCCTCCTGAAGATGCTGTTGTTTCATTTTGTGGCCATGTTTTCTGTAACCAATGCATCTGTGAACATCTTACTGGTGATGACAATCAGTGCCCTGCTACAAATTGCAAAAGTCGACTGAGTACATCTTTGGTACTTCCAAAAGCCACACTGAACAATTGTCTTTCTGACCAGGGTTGTGATAATTCACCTGGTTGCTCTGGTTCTGAAGTGGAAGAATTTGAGCCTTGGTCTCAAAGTCAGCCATATGactcttcaaaaataaaagctGCACTTGAGGTGTTGAAGTCATTGTGTAACCCACAGTGCTATACATCAAAAAGTATTTCTGAGCAAAAGGAAGATAATGACTGCTCTGGGAACCCCTCCAATGCTAACAATGAGAAATCCTTCAAAGATTCTCCTGAGAGTCAAAATTTGTCTGAGAATAGAAGCTCTAATGATTCAGTTACTGTTGTAGGGGAGAAAGCGATAGTGTTTTCTCAGTGGACAAGGATGCTAGATTTGCTTGAAGTGTGTCTTAAGAATTCTTCGATTCAGTATAGAAGGCTTGATGGAACAATGTCAGTTGCTGCAAGAGATAAAGCTGTTAAAGATTTTAACACTCTTCCTGAGGTATCAGTTATGATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTAAACTTGGTGGTAGCTTGCCATGTTCTTATGCTAGATTTATGGTGGAATCCTACAACTGAAGACCAAGCAATAGATAGAGCACATCGAATTGGGCAGACTCGTCCTGTGACTGTTTTGCGGTTAACTGTGAGAGATACAGTTGAAGATCGTATTCTAGCTCTGCAGCAAAAGAAGAGAACGATGGTTGCATCTGCATTTGGGGAGGATGGAACTGGTGATCGTCAGAGTCGCCTCACTGTggatgatttaaaatatttgttcatGATGTGA 4065 0.3988 MAEGDVDFSELFSAADGDDDGMFYIDIQTVLKVLDEADSCDPQENSPEDSSSKNVSPSEFGIHETVQIPNGSQVLEEPHFSRLDFVDSVTSCSPFCSDVSDSGARGSVGLSDSAANSLLDCERENQGPQSQACSSPNAFPGNFSDSFSPGESDEIFYTERTGVSKHEIPAYSVETSFPEAQSNNISICGDNLNLNMWKGENESQFKHVGEDVESEHASLSSIVDNGDVNIEDYVEDIIGEVYGQQENDSCTSFETSFMDADRSLHVATSTDSTVGQGSHVSSDFVDYHLSSDCYLGTDAGPFVADSFYLPNGICSQLWTNEEMMNNMKVENAELNADLACMSNGIPSSTTGSISLQDSQIMLADSGYPSFHSGKVIFDDMSSLPLSACASYMSYGDHHQNNFYNVDAEFNLGQEVKQTPGIFSSVGCQAYNCFKNEDNYAVITSEISNQYQDSIGGTASVQGNMSNLNAKAADISWPHAQALIASEKQFGDVKREGGGKMIQHKLIDTHLSKGTTENFHIEEDLDVCIIEDISHPAPTSRSADSGNSLNISQSSRYVDSQSYMVGSTRLKACDERNILRVALQDLSQPKSEVSPPEGLLAVPLLRHQRIALSWMVQKEKSSWYCSGGILADDQGLGKTVSTIALILKERPPLPNGCTNAQKSELKTLNLDVDDDVLPQNGRVKEESNMCKDKSSRYPIKSMNLLMQAKGRPSAGTLIVCPTSVLRQWAEELRSKVTSLANLSVLVYHGSNRTKDPYEVAKYDVVLTTYSIVSMEVPKQPLSDKDDEEKGNFEDHAVPSRKRKSPSNSSKTGKKTLDGTILEAVARPLAKVAWFRVVLDEAQSIKNHKTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSSIKIPISRNPAKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKYVELKKVEFSMEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWRSSVEVAKRLPQEKQISLLKCLEASLALCGICNDPPEDAVVSFCGHVFCNQCICEHLTGDDNQCPATNCKSRLSTSLVLPKATLNNCLSDQGCDNSPGCSGSEVEEFEPWSQSQPYDSSKIKAALEVLKSLCNPQCYTSKSISEQKEDNDCSGNPSNANNEKSFKDSPESQNLSENRSSNDSVTVVGEKAIVFSQWTRMLDLLEVCLKNSSIQYRRLDGTMSVAARDKAVKDFNTLPEVSVMIMSLKAASLGLNLVVACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVRDTVEDRILALQQKKRTMVASAFGEDGTGDRQSRLTVDDLKYLFMM 1354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1751 1354 ProSiteProfiles Zinc finger RING-type profile. 1041 1080 IPR001841 -
Ssu5g1751 1354 Pfam Helicase conserved C-terminal domain 1197 1296 IPR001650 -
Ssu5g1751 1354 MobiDBLite consensus disorder prediction 778 800 - -
Ssu5g1751 1354 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1190 1349 IPR001650 -
Ssu5g1751 1354 SMART helicmild6 1213 1296 IPR001650 -
Ssu5g1751 1354 Gene3D - 1112 1354 IPR027417 -
Ssu5g1751 1354 Pfam SNF2-related domain 623 1002 IPR000330 GO:0005524|GO:0140658
Ssu5g1751 1354 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 714 887 IPR014001 -
Ssu5g1751 1354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 933 1353 IPR027417 -
Ssu5g1751 1354 SMART ultradead3 599 904 IPR014001 -
Ssu5g1751 1354 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 526 1353 - -
Ssu5g1751 1354 MobiDBLite consensus disorder prediction 1157 1193 - -
Ssu5g1751 1354 MobiDBLite consensus disorder prediction 123 145 - -
Ssu5g1751 1354 SUPERFAMILY RING/U-box 1038 1087 - -
Ssu5g1751 1354 ProSitePatterns Zinc finger RING-type signature. 1056 1065 IPR017907 -
Ssu5g1751 1354 CDD SF2_C_SNF 1199 1306 - -
Ssu5g1751 1354 MobiDBLite consensus disorder prediction 777 813 - -
Ssu5g1751 1354 Gene3D - 697 786 IPR038718 -
Ssu5g1751 1354 Gene3D - 799 926 IPR038718 -
Ssu5g1751 1354 CDD DEXDc_SHPRH-like 603 925 - -
Ssu5g1751 1354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1034 1091 IPR013083 -
Ssu5g1751 1354 Gene3D - 572 667 IPR038718 -
Ssu5g1751 1354 Pfam Zinc finger, C3HC4 type (RING finger) 1041 1077 IPR018957 GO:0046872
Ssu5g1751 1354 SMART ring_2 1041 1079 IPR001841 -
Ssu5g1751 1354 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 526 1353 - -
Ssu5g1751 1354 MobiDBLite consensus disorder prediction 38 57 - -
Ssu5g1751 1354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 588 925 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1751 Ssu-Chr5 52564008 52572372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1751 494 1353 RAD5 or RAD16-like Gene Family AT1G61140 59.462 0.0 972
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu5g1751 SNF2_N 2.6e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1751 - - gmx:100802436 2255.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1751 5 52564008 52572372 Ssu1g0384 1 8862426 8869684 PCT