Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1749 ATGGATAACATTGTATTAAACCTGACTGCTTTATACACCTtggttcttttactttttctatcTTATATGCCTGCTCTTTCATTTTCCTCTAGACATAGCCAATATTGGGGTGGTGGGAGGATATTGAGCTCTGGCGATAATAATGGTGATCTTGTGACTAACTTGCCTGGCCAGCCTCGTGTAGATTTCGATCACTATGCTGGATATGTCACGGTCAATGAAACCAATGGACGGGCACTCTTTTACTGGTTCTATGAGGCTATGACCAAGCCAGAAGAGAAACCATTGGTGCTTTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATACGGAGCAACACAGGAGATTGGCCCATTTTTAGTGGACACCGATGGCCAAGGCCTCAAATTTAATAACTTCTCATGGAACAGAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCCTACTCAAATACAACCAGTGACTATGACCAATTGGGAGATGACTTCACAGCTAATGATGCCTACTCTTTTCTTCACAATTGGTTCCTAAAGTTTCCATCATATAGAACAAGGACATTTTACATAGCAGGGGAGAGCTATGCAGGAAAGTATGTACCAGAGCTGGCTGAACTCATCCATGATAGGAACAAGGACCCCTCCCACTATGTTGATCTCAAGGGTATTCTGTTGGGTAACCCTGAAACATCGGATGCTGAGGACTGGATGGGTCTGGTTGATTATGCTTGGAGCCATGCTGTGATATCTGAtgaaactcataaaataatcaaaacaagttGTGACTTTAACAGCAGTGATCCATGGCGCAATGAAAATTGTAGTCAAGCTGTGGATGAAGTACTCAAACAATACAACGAAATTGATATCTACAGTCTCTACACCTCTGTCTGTTTCGCCAGTACTGCGCGTTCAAACGATCAATCCATACAAACTTCGATGAAGCTTTCATCTAAAATGATGCCTAGGATGTTGGGTGGCTATGATCCATGCCTCGATGACTATGCTAAAGCATTTTATAATAAACCAGATGTTCAGAAAGCTCTCCATGCCAGCGATGGTCACAATCTAAAGAATTGGAGCATTTGCAAcAACAAGATATTCAATAACTGGGCCGATTCAATGCCATCTGTTATCCCAATCTACAAGAAGCTAATTTCAGCCGGACTTAGGATTTGGGTTTACAGCGGAGACACAGATGGTAGAGTACCAGTGCTGTCCACAAGGTACAGCTTAAGCTCTCTTGCGTTGCCTGTCACCAAATCATGGAGGCCTTGGTACCATGAAAATGAGGTTAGCGGGTGGTTTGAAGAATATCAGGGGCTTACATTTGCAACGTTTCGAGGAGCTGGCCATGCAGTTCCCTGTTTTAAACCAAGCAACTCACTTGCATTCTTCTCCTCCTTTCTCAATGGAGAATCACCACcttctacaaaataa 1455 0.4206 MDNIVLNLTALYTLVLLLFLSYMPALSFSSRHSQYWGGGRILSSGDNNGDLVTNLPGQPRVDFDHYAGYVTVNETNGRALFYWFYEAMTKPEEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGQGLKFNNFSWNREANMLFLESPVGVGFSYSNTTSDYDQLGDDFTANDAYSFLHNWFLKFPSYRTRTFYIAGESYAGKYVPELAELIHDRNKDPSHYVDLKGILLGNPETSDAEDWMGLVDYAWSHAVISDETHKIIKTSCDFNSSDPWRNENCSQAVDEVLKQYNEIDIYSLYTSVCFASTARSNDQSIQTSMKLSSKMMPRMLGGYDPCLDDYAKAFYNKPDVQKALHASDGHNLKNWSICNNKIFNNWADSMPSVIPIYKKLISAGLRIWVYSGDTDGRVPVLSTRYSLSSLALPVTKSWRPWYHENEVSGWFEEYQGLTFATFRGAGHAVPCFKPSNSLAFFSSFLNGESPPSTK 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1749 484 Gene3D - 336 372 - -
Ssu5g1749 484 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 481 IPR001563 GO:0004185|GO:0006508
Ssu5g1749 484 Pfam Serine carboxypeptidase 57 477 IPR001563 GO:0004185|GO:0006508
Ssu5g1749 484 Gene3D alpha/beta hydrolase 47 305 IPR029058 -
Ssu5g1749 484 Gene3D - 383 477 - -
Ssu5g1749 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 447 460 IPR001563 GO:0004185|GO:0006508
Ssu5g1749 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 132 144 IPR001563 GO:0004185|GO:0006508
Ssu5g1749 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 181 206 IPR001563 GO:0004185|GO:0006508
Ssu5g1749 484 PRINTS Carboxypeptidase C serine protease (S10) family signature 145 155 IPR001563 GO:0004185|GO:0006508
Ssu5g1749 484 ProSitePatterns Serine carboxypeptidases, serine active site. 195 202 IPR018202 GO:0004185
Ssu5g1749 484 PANTHER CARBOXYPEPTIDASE 10 481 - -
Ssu5g1749 484 SUPERFAMILY alpha/beta-Hydrolases 47 478 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1749 Ssu-Chr5 52529861 52533837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1749 341 478 Calmodulin-binding Proteins AT2G22960 33.813 9.69e-18 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1749 K16297 - gmx:100815993 931.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1749 5 52529861 52533837 Ssu1g0385 1 8887451 8892303 PCT