Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1747 ATGGACAGCACAGATTCATCGTCAGGGTCTCAGCACCCACAGCTCCCTCCAGGGTTTCGGTTCCACCCCACCGATGAAGAACTCGTCGTTCACTACCTCAAGAGAAAAGCTGCATCTGCACCCCTTCCCGTAGCCATCATCGCCGATGTTGATCTCTACAAGTTCGACCCTTGGCAGCTCCCAAGTAAAGCCGCGTTTGGGGAGCAAGAGTGGTACTTTTTCAGCCCAAGGGATCGGAAATACCCAAATGGGGCCAGGCCCAATAGGGCTGCTACTTCTGGGTATTGGAAGGCCACTGGAACTGACAAGCCTATACTAACATCTGATGGGCACCAGAAAGTTGGAGTCAAAAAAGCACTTGTTTTTTATGGTGGAAAACCTCCAAAAGGGGTTAAAACCAATTGGATTATGCATGAGTATAGGCTTACTGATGATTCCATTAATTCAAGCTCAAAACCTCCTCTGGCTGCTCATGATCctccaaacaagaaaaattcCCTGAggCTGGACGATTGGGTTTTGTGCCGAATATACAAGAAAAGCAACAATACCACCCTGCCAAGGCCCCCCCTGATGGAGCATGATGAAGAGCTGTCAATGGAGAACATGTTACCAACGATGTCAACTTTGTCAATGGCTAATAATAACGCCCAAAATTGTAAACCTCCGTCTTTGAGGAACACGAATTATGGACCGCTAGGACTTGAAAATGACGACAACTTCTTCGATGGAATCTTAGCCGTTGATCAGAGCATACAAAATGGTTCTGATTCTCACCCATTGATCTCTCCAAACTCAACGGGTGATAACAATAGTAGCAACTTCCCTATCAAACGTGCATTGACGTCACAGCAGCTTTGGAACGAGACAGGGTCTCCGGGGTCATCCTCTTCATGTAAGCGATTCCACGGTGATCTTAATAGTGGAAGCAGCACCGCTGAGGACAACGATTCCTTTGTTTCCCTGCTTAGCCAGTTTCCTCAGAACGCAACGTTTCATCCAAACGCGATTCATGGTTCTGTTGGGGATGGTGCGCTGAGGCAACAATTTCAGCTTCCGGGAGTAAATTGGAACTGA 1077 0.468 MDSTDSSSGSQHPQLPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIADVDLYKFDPWQLPSKAAFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILTSDGHQKVGVKKALVFYGGKPPKGVKTNWIMHEYRLTDDSINSSSKPPLAAHDPPNKKNSLRLDDWVLCRIYKKSNNTTLPRPPLMEHDEELSMENMLPTMSTLSMANNNAQNCKPPSLRNTNYGPLGLENDDNFFDGILAVDQSIQNGSDSHPLISPNSTGDNNSSNFPIKRALTSQQLWNETGSPGSSSSCKRFHGDLNSGSSTAEDNDSFVSLLSQFPQNATFHPNAIHGSVGDGALRQQFQLPGVNWN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1747 358 SUPERFAMILY NAC domain 10 180 IPR036093 GO:0003677|GO:0006355
Ssu5g1747 358 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Ssu5g1747 358 MobiDBLite consensus disorder prediction 1 21 - -
Ssu5g1747 358 MobiDBLite consensus disorder prediction 255 314 - -
Ssu5g1747 358 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 331 - -
Ssu5g1747 358 ProSiteProfiles NAC domain profile. 15 180 IPR003441 GO:0003677|GO:0006355
Ssu5g1747 358 PANTHER NAC TRANSCRIPTION FACTOR 56 1 331 - -
Ssu5g1747 358 Gene3D NAC domain 24 185 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1747 Ssu-Chr5 52419316 52420758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1747 5 358 NAC Transcription Factor Family AT1G61110 54.420 7.50e-113 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu5g1747 NAM 1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1747 - - gmx:100797132 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1747 5 52419316 52420758 Ssu1g0389 1 9018773 9020342 PCT