Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1742 ATGAATGAACTTGACCTCACACATTGTAAGGACACTATAATGGGAGGGCCACTCCTAAGGGGTGTTTCAGGTGGGGAATGGAAAAGAGTTAGCATAGGGCAACAACTTTTAACTAATCCAAGTCTTTTGCTTGTTGATGAGCCAACTTCAGGTCTTGACTCAACCACTGCTAGAAGAATTGTGCTAACTCTCTGTGAGTTAGCTAAAGATGGAAGGACTGTCATAATGACTATCCACCAGCCTTCCAGCAAACTTTTTTACATGTTCCAGAAGATTTTGCTATTATCAGATGGTAAAAGCCTGTACTTTGGGAAAGGAGAAAATGTTATGAATTACTTCTCCAGTATCGGTTATGCTCCATCTGTAGCCATGAATCCGACAGATTTCTTACTTGATCTTGCAAATGAGGATACAAATGTTACAAAACAAGTGTTATTATCTGCTTTTGAGAGTAACGTTGAATGCGAAGTGAGGATGGAACTTCAAATTTCCAGGGTTTCATTTCATGACAATTCAGAAGATGAGATATTTGCTCAATGTTGCACAACTTGGCGGCAGCAGTTTACTATTTTACTGAGAAGGGGtttcaaagaaagaaagtatgAGCAATTTTCAGTCTACAAAATCTGTCACGTTTTGGCCATATCATTCTTTGCAGGCTTTCTCTGGTGGCAGTCTGGAGTTGATCAAATGCAAGGCCGGGTTGGACTACTTTTCTACTATACACAATTTTGTGGATTCTTCCCTATGGTCCAATCCATCTTTACCTTTCCTCGAGATCGCAAAATGATAATAAAGGAAAGGTCCTCCTACATGTATAGACTGTCATCTTACTTCATAGCAAATAATCTTGTTGACCTGCCATTGCAGCTAGTCTTGCCAACCCTTTTTGTCACCATTACTTATTGGATGGGAGGGCTAAAAGCCGATGCTTCAATTTTCTTTCGAACTCTAGCTACTGCTCTTCTCTATGCTTTGGTATCACAGGGTATTGGCCTTGCTATTGGTGCAGTGCTGATAAATAATCAAAGAGTGGCTGCTACAGTTGGAGCTGTGGTCATGACATTATTTGTTCTAGTTAATGGCTACTTTGTTCGTAATACACCAGCGTTTGTATCCTGGATAAAGTACATGTCTCATAGCTATTATTCCTATAAGCTCTTGCTAGGATCACAGTTTAACGATTATGACACTTACCATTGTGGTCCAAATGTCACCTGTTCAGTTAGGAACTATCCTACACTTAAACGTGTAGGCGTCGACAAGCAAGGCCTCTCTGTTGCAGCCTTGGTGGCAATGCTTATAGACTACAGACTTGTTGCTTATTTAGCCCTTATGATTGGCACTAAACATAACTAG 1359 0.3996 MNELDLTHCKDTIMGGPLLRGVSGGEWKRVSIGQQLLTNPSLLLVDEPTSGLDSTTARRIVLTLCELAKDGRTVIMTIHQPSSKLFYMFQKILLLSDGKSLYFGKGENVMNYFSSIGYAPSVAMNPTDFLLDLANEDTNVTKQVLLSAFESNVECEVRMELQISRVSFHDNSEDEIFAQCCTTWRQQFTILLRRGFKERKYEQFSVYKICHVLAISFFAGFLWWQSGVDQMQGRVGLLFYYTQFCGFFPMVQSIFTFPRDRKMIIKERSSYMYRLSSYFIANNLVDLPLQLVLPTLFVTITYWMGGLKADASIFFRTLATALLYALVSQGIGLAIGAVLINNQRVAATVGAVVMTLFVLVNGYFVRNTPAFVSWIKYMSHSYYSYKLLLGSQFNDYDTYHCGPNVTCSVRNYPTLKRVGVDKQGLSVAALVAMLIDYRLVAYLALMIGTKHN 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1742 452 PANTHER ABC TRANSPORTER G FAMILY MEMBER 21 1 449 - -
Ssu5g1742 452 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 449 - -
Ssu5g1742 452 Gene3D - 1 116 IPR027417 -
Ssu5g1742 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 131 IPR027417 -
Ssu5g1742 452 Pfam ABC-2 type transporter 79 135 IPR043926 GO:0140359
Ssu5g1742 452 Pfam ABC transporter 2 50 IPR003439 GO:0005524
Ssu5g1742 452 Pfam ABC-2 type transporter 186 393 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1742 Ssu-Chr5 52129569 52131404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1742 11 108 Calmodulin-binding Proteins AT2G36910 33.981 2.99e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1742 K05681 - gmx:100800295 789.645