Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1729 ATGTCGACAGTTACACCAAGTTCCATGCCCCACGAAAACTTGCGTTCATTCCCAGTGCTTTTCTTCACTATCTTTCTTCTCTGCCTTCCTCTAATATTCATCATCAAACGGTATTCCAATGCAGCAACCAGCAAAAACTCACCCCCTTCACCTCCAAGATTACCTCTACTGGGTAATCTCCATCAACTTGGCTTGTTCCCACACCGCACACTCCAAACTTTGGCTCAAAACTATGGCCCTCTAATGATGCTTCATTTTGGGAAGGTACCAGTCCTTGTGGTCTCATCTGCTGATGCAGCACGTGAGGTAATGAAAACTCATGACCTGGTCTTCTCAGACAGGCCACAACGTAAGATGAATGACATCCTCTTATACGGTTCCAAAGACCTTGCAAGTTCTACATATGGAGAATACTGGAGGCAAATGAGGAGTCTTAGTGTGTTGCACCTTTTGAGTACCAAAAGGGTTCAGTCTTTTTGTGGTGTGAGAGAGGAGGAAACTGCTAGAATGATGGAAAACATTAGGCAGTGTTGTTATGATTCATTGCATGTGAATTTGACTGACATGTGTGCAGCACTCACGAATGATGTGGCATGTAGAGTGGCTCTGGGAAGGAGATACCGTGGGGGAGAGGGGAGTGAGTTTCAGCAGCTGTTGTTGGAGTTTGGGGAGTTGTTGGGTGCTGTGTCTATGGGGGACTTTTTACCTTGGCTTGGTTGGGtgaccaaggttagtggtttgTCTGAGAGAGCACATAGAGTGGCCAAACATTTGGACCAGTTTATAGATGAAGTGATTGAGGAGCATGTCAGGAATGGAGGAGATAAGCATGTTGATGTTGATAGTGAGGAGCAGAATGATTTTGTGGATGTTTTGCTTTCGATGGAAAAGAGTAACACTACTGGCTCGCCACTTGATAGGACTGCAATAAAGGCTTTGATACTGGATATGTTTGTTGCTGGTACTGACACTACTTACACTGCCCTGGAGTGGACAATGTCAGAACTGTTGAAGCACCCAACTGTGATGCATAAACTGCTAGACGAGGTGAGAAGTGTGGCTGGTAGCAGGACTCACGTAACTGAGGAGGATTTGGGCCAAATGAACTACTTGAAGGCTGTGATCAAAGAAAGTCTTCGCCTTCATCCCCCACTTCCCCTAATAGTTCCTCGGAAATGCATGGAAGATATCAAAGTGAAGGGGTATGACATTGCAGCTGGCACTCAGGTATTAGTGAATGCTTGGGCAATTGGAAGAGACCCTTCATCTTGGGACCAACCTCTAGAGTTTAAACCAGAAAGGTTCCTCGGCAGTTCAATAGACTTCAAAGGACATGATTTTGAGCTTATCCCATTTGGTGCAGGAAGAAGAGGTTGCCCTGGTGTAACGTTTGCCACAACTATAATTGAGATGGTAACAGCAAACCTTGTCCACCAATTTGATTGGGCATTGCCTGGTGGGGCTTCAGGGGAGGACTTGGACATGTCTGAAACTACTGGTCTTGCTGTTCATAGAAAATCTCCTCTCCTGGCAGTGGCAACTGTATATcagagaaattaa 1560 0.4481 MSTVTPSSMPHENLRSFPVLFFTIFLLCLPLIFIIKRYSNAATSKNSPPSPPRLPLLGNLHQLGLFPHRTLQTLAQNYGPLMMLHFGKVPVLVVSSADAAREVMKTHDLVFSDRPQRKMNDILLYGSKDLASSTYGEYWRQMRSLSVLHLLSTKRVQSFCGVREEETARMMENIRQCCYDSLHVNLTDMCAALTNDVACRVALGRRYRGGEGSEFQQLLLEFGELLGAVSMGDFLPWLGWVTKVSGLSERAHRVAKHLDQFIDEVIEEHVRNGGDKHVDVDSEEQNDFVDVLLSMEKSNTTGSPLDRTAIKALILDMFVAGTDTTYTALEWTMSELLKHPTVMHKLLDEVRSVAGSRTHVTEEDLGQMNYLKAVIKESLRLHPPLPLIVPRKCMEDIKVKGYDIAAGTQVLVNAWAIGRDPSSWDQPLEFKPERFLGSSIDFKGHDFELIPFGAGRRGCPGVTFATTIIEMVTANLVHQFDWALPGGASGEDLDMSETTGLAVHRKSPLLAVATVYQRN 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1729 519 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 452 461 IPR017972 GO:0005506|GO:0016705
Ssu5g1729 519 SUPERFAMILY Cytochrome P450 48 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g1729 519 PRINTS E-class P450 group I signature 449 459 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g1729 519 PRINTS E-class P450 group I signature 459 482 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g1729 519 PRINTS E-class P450 group I signature 413 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g1729 519 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g1729 519 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g1729 519 PRINTS E-class P450 group I signature 75 94 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g1729 519 PRINTS E-class P450 group I signature 99 120 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g1729 519 PRINTS E-class P450 group I signature 193 211 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g1729 519 PRINTS E-class P450 group I signature 372 390 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g1729 519 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g1729 519 PRINTS P450 superfamily signature 373 384 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g1729 519 PRINTS P450 superfamily signature 450 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g1729 519 PANTHER CYTOCHROME P450 71B11-RELATED 22 517 - -
Ssu5g1729 519 Gene3D Cytochrome P450 33 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g1729 519 Pfam Cytochrome P450 48 506 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu5g1729 519 PANTHER CYTOCHROME P450 FAMILY PROTEIN 22 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1729 Ssu-Chr5 51950713 51953371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1729 20 514 Cytochrome P450 AT3G48270 49.499 7.51e-180 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1729 - - gmx:100819183 874.774