Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1724 ATGAGTGATTGTTTGTTTGGTGTTGGTTGGAGACAGTCTTTAGCAGCCTGGCTGCAGAGTGTAGCAGTCACATCCCAGGATCACTATGAGTTGTGGCTGCTTTGGAGCTTCAACTCTCAGAAAAAAAGGAATTCTTCTCGTGCTCCCAATGAGATTGATGGCTATCCACTTGATAATGTTACTCATTTCTCTGATAAAGACCTGAGACTGGCCACTGATAACTATCATCCAAGCAAAAAGATAGGACGAGGAGGTTTTGGAACTGTTTACCAGGGAACCTTGAGAGATGGAAGACAGGTAGCCGTGAAGATGCTTTCAGCTGGGTCAAAGCAGGGAGCTCGTGAATTTTTAACTGAAATTAAAACTCTATCAAATGTTAAGCATCCAAACCTGGTTGAATTGATTGGTTGCTGCGTTCAAGAAACTAATCGTATATTAGTGTACGAATATGTAGAAAATAACAGCCTTGATCGTGCATTACTTGGCTCAAGAAGTACAAATATAATGTTAGACTGGAGAAAAAGATCTGCTATTTGCATGGGTACTGCTAGAGGTCTTGCATTTCTTCACGAAGAACTTGTGCCACACATTGTGCACAGAGACATCAAGGCAAGCAACATACTACTTGACAGAGACTTCAATCCAAAAATAGGAGATTTCGGGTTGGCTAAATTATTTCCAGATAACATCACTCACATTAGCACAAGGATTGCTGGAACAACTGGTTACTTAGCACCAGAATATGCAATGGGTGGCCAGTTAACCATGAAGGCTGATGTATACAGTTTTGGGGTTCTTATACTTGAAATAATTAGTGGCAAAAGCAGTGCAAGGACAAACTGGGGAGGGTCCAACAAATACCTGTTGGAATGGGCCTGGCAACTGTATGAAGAGGGGAAACTGTTGGAGCTTGTGGATCCAGACATGATTGAATTCCCTGAGGAAGAGGTGATAAGGTACATGAAGGTTGCTTTTTTCTGCACACAAGCAGCAGCAAGTAGAAGGCCAATGATGTCCCAGGTTGTTGACATGCTGTCTAAGAACATAAGGCTCAATGAAAAGCAACTAACAGCACCAGGGTTCTTCCAGGATTCAGGAGCATCCTCTCTAAAGAAGTCATCCTTTGAGTCCACAAGCTATCTATTTAGCTCTACCCCTGCCAGTATTACTCAGTTGAACCCCCGGTGA 1188 0.4276 MSDCLFGVGWRQSLAAWLQSVAVTSQDHYELWLLWSFNSQKKRNSSRAPNEIDGYPLDNVTHFSDKDLRLATDNYHPSKKIGRGGFGTVYQGTLRDGRQVAVKMLSAGSKQGAREFLTEIKTLSNVKHPNLVELIGCCVQETNRILVYEYVENNSLDRALLGSRSTNIMLDWRKRSAICMGTARGLAFLHEELVPHIVHRDIKASNILLDRDFNPKIGDFGLAKLFPDNITHISTRIAGTTGYLAPEYAMGGQLTMKADVYSFGVLILEIISGKSSARTNWGGSNKYLLEWAWQLYEEGKLLELVDPDMIEFPEEEVIRYMKVAFFCTQAAASRRPMMSQVVDMLSKNIRLNEKQLTAPGFFQDSGASSLKKSSFESTSYLFSSTPASITQLNPR 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1724 395 SMART serkin_6 75 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1724 395 Gene3D Transferase(Phosphotransferase) domain 1 151 360 - -
Ssu5g1724 395 PANTHER - 41 388 - -
Ssu5g1724 395 ProSiteProfiles Protein kinase domain profile. 75 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1724 395 Pfam Protein tyrosine and serine/threonine kinase 78 345 IPR001245 GO:0004672|GO:0006468
Ssu5g1724 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Ssu5g1724 395 Gene3D Phosphorylase Kinase; domain 1 46 150 - -
Ssu5g1724 395 CDD STKc_IRAK 81 347 - -
Ssu5g1724 395 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 41 388 - -
Ssu5g1724 395 ProSitePatterns Protein kinases ATP-binding region signature. 81 103 IPR017441 GO:0005524
Ssu5g1724 395 SUPERFAMILY Protein kinase-like (PK-like) 58 378 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1724 Ssu-Chr5 51879490 51883873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1724 63 375 Receptor kinase-like Gene Family AT1G56120 52.077 2.27e-107 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Ssu5g1724 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1724 - - gmx:100788143 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1724 5 51879490 51883873 Ssu1g0406 1 9454662 9458135 PCT