Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1714 ATGTACGTAGCTTCCATGCGTAAGTCTTTCAAGGACTCCTTGAAAGTCCTTGAAGCTGATATCCAGCACGCCAATACCCTGGCGTCAGATTTTCCAAGGGAGTATGATGGTGCGTGCCTTCAGATGAGAATGTCATACAGTCCAGCTGCACACCTGTTTCTGTTTTTGGTGCAATGGACAGATTGTCATCTTGCTGGAGCCCTTGGACTGTTAAGAATCCTAATTTACAAGGTCTATGTGGATGGGACAACCACCATGTCTACACATGAAAGAAAAGCAAGTATTAGAGAATTCTATGCGGTCATTTATCCCACTTTATTGCAACTTCAAAAAGGTGTCACTGATACTGAGGATAAAAAGCAAAAGGCTGTATGCATGGAGAGGTATCGCAGAAGAGATGATGAGGAGTATAGGCAGTCTTCTGACATAGACATTGAAAGAGAAGATGAATGTGGAATATGCATGGACATGAATAGTAAGATTGTGCTGCCCAACTGCAATCATGCCATTTGCCTGAAATGTTACCGAGAATGGCGAACAATATCACAATCATGCCCATTTTGCCGTGACAGTCTGAAGAGAGTGAACTCAGGTGATCTCTGGGTATTCACTGATAGAAGGGATGTGGTAGACATGGCAACAGTGAAAAGGGAGAATCTTAGAAGGCTTTTCATGTACATAGATAAGTTACCTTTGATTGTTCCAGACTCCCTTTTTGACACGTATGACTCTCACATAAGGTAA 744 0.4247 MYVASMRKSFKDSLKVLEADIQHANTLASDFPREYDGACLQMRMSYSPAAHLFLFLVQWTDCHLAGALGLLRILIYKVYVDGTTTMSTHERKASIREFYAVIYPTLLQLQKGVTDTEDKKQKAVCMERYRRRDDEEYRQSSDIDIEREDECGICMDMNSKIVLPNCNHAICLKCYREWRTISQSCPFCRDSLKRVNSGDLWVFTDRRDVVDMATVKRENLRRLFMYIDKLPLIVPDSLFDTYDSHIR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1714 247 SMART ring_2 151 188 IPR001841 -
Ssu5g1714 247 Pfam Zinc finger, C3HC4 type (RING finger) 148 194 - -
Ssu5g1714 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Ssu5g1714 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8-LIKE 4 247 - -
Ssu5g1714 247 PANTHER RING FINGER PROTEIN 41, 151 4 247 - -
Ssu5g1714 247 SUPERFAMILY RING/U-box 140 194 - -
Ssu5g1714 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 197 IPR013083 -
Ssu5g1714 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1714 Ssu-Chr5 51723787 51727040 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1714 K25840 - gmx:100777318 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1714 5 51723787 51727040 Ssu5g1714 5 51723787 51727040 ECH
Ssu5g1714 5 51723787 51727040 Ssu1g0412 1 9592244 9596626 PCT