Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1703 ATGGTTGACAATGTGTTAGAGCTCAACCTTGGTTTAGGCACTGGCTATGCAGGGCAATCAACGAGGCAAAGGTGCCCCGCGCCGTTTCTGTTGAAGACGTACGATTTGTTGGAAGAAGGTGAGGCTGAAGATAGCACCCAAATTGTGTCATGGAACGCAGAAGGAACTGGTTTTGTTGTGTGGTCTCCAGCTGAGTTCTCTGACCTCACCTTGCCTAGATATTTCAAGCACAACAACTTCTCTAGCTTCATACGCCAATTGAATACATATGGATTTAAGAAAATATCATCCAAAAGATGGGAATTCAAGCACGAGAAATTTCAGAGGGGTTGCAGGCATTTGCTAGTTGGAATTACGAGGAAAAAGTGCGAGCCAAGTGTCTTTCCTGCATACCTCAAGTCTTCTTCAGAGGAAAATGCAATGACTTCCACGGAAGAAAACAATCACCAGTTACTTATGGAGGAGAACAAGAACCTAAAGAAGGAGAGATTAGAGCTGCAAATGCAGATAGACGAATGCAAAGAACTTGAAATGAAGTTGTTGGCATGTCTCTCTCAGTTTATGGGTAACCACCAAAATAAAGTTAGGAGACTatgttaa 600 0.4267 MVDNVLELNLGLGTGYAGQSTRQRCPAPFLLKTYDLLEEGEAEDSTQIVSWNAEGTGFVVWSPAEFSDLTLPRYFKHNNFSSFIRQLNTYGFKKISSKRWEFKHEKFQRGCRHLLVGITRKKCEPSVFPAYLKSSSEENAMTSTEENNHQLLMEENKNLKKERLELQMQIDECKELEMKLLACLSQFMGNHQNKVRRLC 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1703 199 ProSitePatterns HSF-type DNA-binding domain signature. 71 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g1703 199 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g1703 199 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g1703 199 PRINTS Heat shock factor (HSF) domain signature 29 52 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g1703 199 Coils Coil 142 179 - -
Ssu5g1703 199 Pfam HSF-type DNA-binding 29 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
Ssu5g1703 199 SUPERFAMILY "Winged helix" DNA-binding domain 26 121 IPR036390 -
Ssu5g1703 199 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A-LIKE 19 199 - -
Ssu5g1703 199 Gene3D - 21 122 IPR036388 -
Ssu5g1703 199 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 19 199 IPR027725 -
Ssu5g1703 199 SMART hsfneu3 25 121 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1703 Ssu-Chr5 51589528 51591764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1703 17 191 HSF AT5G62020 35.266 2.12e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Ssu5g1703 HSF_DNA-bind 7.2e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1703 K09419 - gmx:100789792 334.339