Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1702 ATGGCGAGTCGGTTTGGGTTTTCGTCTTCCGCTCCGGCCTCGATGGCCGTGATCAGCACCCCCTCGCCGGACCTCGCCCTCACCAACCTCGCCTACTGTTCCCCCTCCGATCTTCGCAACTTCGCCGTCCACGGTCACAACAACCTCTATCTCGCCACCGTCGCCGATTCCTTCGTCTTATCTCTTTCTGCTCATGAGAGCATACGCAGTGGCCAGATTGCGTTGAATTCCATTCAACGTCGGTGTGCCAAAGTTTCTACCGGTGAATCCGTATCTGTGAGCCGATTTGAGCCACCTGACAACTTCAACCTCGCACTGCTAACCCTTGAATTGGACTTTGTTAAAAAGGGGAATAAGAGTGAACAGGTTGATGCCGTTCTACTAGCTAAGCAACTCCGGAAGAGATTTATGAACCAGGTTATGACTGCAGGGCAGAAAGTGGCATTTGAGTATCATGGAAATAATTATAGCTTTAGTGTCAGTCAAGCAGCTGTTGAGGGCCAAGAAAAGTCTAATTCCCTTGAAAGAGGGATGATTTCAGATGACACATACATTGTTTTTGAAACATCACGTGATAGTGGAATTAAGATTGTCAATCAACGTGAGGCTGCCACTAGCAACATTTTCAAGCAGAAAGAATTTAACCTTCAGTCTCTGGGTATTGGTGGTCTGAGTGCAGAGTTTGCAGATATATTTCGAAGAGCTTTTGCCTCTCGTGTTTTCCCTCCCCACGTGACTTCTAAATTAGGAATCAAGCATGTGAAGGGCATGCTTCTGTATGGGCCTCCTGGAACTGGAAAGACACTTATGGCACgtcaaattggaaaaattttgaaTGGGAAGGAACCAAAGATTGTAAATGGCCCTGAAGTTTTGAGCAAATTCGTTGGTGAAACtgaaaaaaatgtgagagaCCTTTTTGCTGATGCTGAACAGGATCAGAGGACCCGAGGGGATGAAAGTGATTTGcatgttataatttttgatgaaattgaTGCTATTTGTAAGTCAAGAGGTTCAACTCGAGATGGTACCGGCGTTCATGATAGCATTGTAAATCAGCTTCTTACTAAGATAGATGGTGTGGAGTCACTAAATAATGTTTTGCTTATTGGAATGACTAATAGAAAAGACATGCTTGATGAAGCTCTCTTAAGACCAGGGAGGTTGGAAGTCCAGGTTGAGATAAGCCTTCCTGATGAAAATGGTCGATTGCAAATTCTTCAAATTCATACTaacaaaatgaaagagaatTCTTTTCTAGCTCCTGATGTGAACCTTCAAGAGCTTGCTGCTCGAACGAAAAACTACAGTGGTGCAGAACTTGAAGGTGTTGTGAAAAGTGCCGTCTCATATGCTTTAAATAGACAATTGAGTCTAGATGATCTCACTAAGCCAGTGGAGGAAGAGAACATTAAGGTTACAATGGATGACTTTTTGAATGCACTCCAAGAAGTTATTCCTGCATTTGGAGCTTCAACTGATGATCTTGAAAGATGCAGACTCCATGGCATGGTGGACTGTGGCGATCGACATAAGCACATTTATCAAAGAGCAATGCTACTTGTGGAGCAAGTTAAAGTGAGTAGAGGAAGCCCACTTGTTACTTGTCTCCTGGAAGGTTCCAGTGGCAGTGGTAAAACTGCGCTGGCAGCTACTGTTGGTATTGACAGCGACTTCCCATATGTCAAGATAGTTTCAGCTGAATCAATGATTGGTCTACATGAGAGCACCAAATGTGCACAGATTATTAAGGTTTTTGAGGATGCATACAAGTCACCATTGAGTGTCATCATTCTTGATGACATTGAGAGATTATTGGAGTATGTGGCCATTGGTCCTCGATTTTCAAACTTGATTTCTCAGACCCTACTGGTCCTGCTCAAACGGCTTCCTCCAAAGGGGAAAAAACTCATGGTTATTGGCACGACAAGTGAACTGGGTTTCTTGGACTCAATTGGATTTTGTGATACCTTCTCTGTTACTTACCATGTTCCTACCTTGAACACAAAGGATGCAAAGAAGGTCCTAGAACAGTTGAATGTGTTTTCTGATGAAGATATTGATTCTGCTGCAGAGGCATTGAATGATaTGCCTATCAGGAAGCTATACATGTTGATTGAGATGGCAGCGCAAGGGGTGCAAGGTGGATCTGCAGAAGCCATCTATTCTGGCAAAGAGAAGATTAACATCTCTCATTTCTATGACTGCCTCCAGGATGTTGTTAGATTATAA 2235 0.4246 MASRFGFSSSAPASMAVISTPSPDLALTNLAYCSPSDLRNFAVHGHNNLYLATVADSFVLSLSAHESIRSGQIALNSIQRRCAKVSTGESVSVSRFEPPDNFNLALLTLELDFVKKGNKSEQVDAVLLAKQLRKRFMNQVMTAGQKVAFEYHGNNYSFSVSQAAVEGQEKSNSLERGMISDDTYIVFETSRDSGIKIVNQREAATSNIFKQKEFNLQSLGIGGLSAEFADIFRRAFASRVFPPHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTRGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNNVLLIGMTNRKDMLDEALLRPGRLEVQVEISLPDENGRLQILQIHTNKMKENSFLAPDVNLQELAARTKNYSGAELEGVVKSAVSYALNRQLSLDDLTKPVEEENIKVTMDDFLNALQEVIPAFGASTDDLERCRLHGMVDCGDRHKHIYQRAMLLVEQVKVSRGSPLVTCLLEGSSGSGKTALAATVGIDSDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIILDDIERLLEYVAIGPRFSNLISQTLLVLLKRLPPKGKKLMVIGTTSELGFLDSIGFCDTFSVTYHVPTLNTKDAKKVLEQLNVFSDEDIDSAAEALNDMPIRKLYMLIEMAAQGVQGGSAEAIYSGKEKINISHFYDCLQDVVRL 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1702 744 ProSitePatterns AAA-protein family signature. 368 386 IPR003960 GO:0005524|GO:0016887
Ssu5g1702 744 Pfam AAA+ lid domain 424 479 IPR041569 -
Ssu5g1702 744 PANTHER VESICULAR-FUSION PROTEIN NSF 61 744 IPR039812 GO:0016887|GO:0035494
Ssu5g1702 744 Gene3D - 206 398 IPR027417 -
Ssu5g1702 744 PANTHER BNAA03G50350D PROTEIN 61 744 - -
Ssu5g1702 744 Gene3D - 12 96 - -
Ssu5g1702 744 SMART AAA_5 533 671 IPR003593 -
Ssu5g1702 744 SMART AAA_5 253 400 IPR003593 -
Ssu5g1702 744 Gene3D - 99 197 - -
Ssu5g1702 744 SUPERFAMILY ADC-like 12 96 IPR009010 -
Ssu5g1702 744 CDD AAA 255 398 - -
Ssu5g1702 744 Pfam ATPase family associated with various cellular activities (AAA) 257 397 IPR003959 GO:0005524|GO:0016887
Ssu5g1702 744 Pfam ATPase family associated with various cellular activities (AAA) 538 651 IPR003959 GO:0005524|GO:0016887
Ssu5g1702 744 Gene3D - 399 486 - -
Ssu5g1702 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 496 IPR027417 -
Ssu5g1702 744 PANTHER VESICULAR-FUSION PROTEIN NSF 10 41 IPR039812 GO:0016887|GO:0035494
Ssu5g1702 744 Gene3D - 495 666 IPR027417 -
Ssu5g1702 744 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 713 IPR027417 -
Ssu5g1702 744 Pfam Cell division protein 48 (CDC48), domain 2 122 183 IPR004201 -
Ssu5g1702 744 PANTHER BNAA03G50350D PROTEIN 10 41 - -
Ssu5g1702 744 CDD AAA 527 645 - -
Ssu5g1702 744 SUPERFAMILY Cdc48 domain 2-like 99 202 IPR029067 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1702 Ssu-Chr5 51543311 51564596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1702 158 472 Calmodulin-binding Proteins AT3G56690 29.653 5.73e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1702 K06027 - gmx:100779259 1340.87