Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1701 ATGGCCTTTGAGCACTGCGTTTCCCACTCCCGGGAATGGAAAACCATCCCAAGCCCCGTGACAGTGACTGAAAATTTTGATGGGTGTTTTGATTGCAACATCTGCTTAGATTTTGCACATGAACCAGTTGTCACCCTTTGTGGCCACCTGTACTGCTGGCCCTGCATCTACAGGTGGCTCCATGTCCAAAGTGCTTCTCTTGCATCCGATGAGCACCCACAATGCCCTGTTTGCAAGGATGACATATCTCATACCACAATGGTTCCTCTCTTTGGCCGGGGCCAGGCCATAGCTCATAGTGACCGTGATGTGAAGGCATCCTATAGAGGTATTTTTATACCACCAAGACCATCTGCTTTGGGTGCTCAATCTCTCATGGCAACATCATCTCAAAGTGGTCAGCAGCTTCCATATCGCAATCCTTATCAGAACTCTCCATTATACCAAGAAGAGGATGATGACACATCATCACAAATGCTCAATCCTGGTGCCACCATGGCACCAGGATTCCCCCACCTTGTGGTTGGGATGTTTGGAGAGATGTTTTATACCCGAGTCTTTGGCAACTCAGAAAATTTATACACCTACCCAAATTCTTATTACCTGGTGGGAAGTAATAGCCCCAGGTTGAGAAGGCAAGAGATGCAGGCAGACAAATCATTGAacagaatttcaatttttctcctTTGTTGCTTCATTCTGTGTCTTATCGTCTTCTGA 720 0.4556 MAFEHCVSHSREWKTIPSPVTVTENFDGCFDCNICLDFAHEPVVTLCGHLYCWPCIYRWLHVQSASLASDEHPQCPVCKDDISHTTMVPLFGRGQAIAHSDRDVKASYRGIFIPPRPSALGAQSLMATSSQSGQQLPYRNPYQNSPLYQEEDDDTSSQMLNPGATMAPGFPHLVVGMFGEMFYTRVFGNSENLYTYPNSYYLVGSNSPRLRRQEMQADKSLNRISIFLLCCFILCLIVF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1701 239 Pfam Zinc finger, C3HC4 type (RING finger) 32 78 IPR018957 GO:0046872
Ssu5g1701 239 SUPERFAMILY RING/U-box 24 91 - -
Ssu5g1701 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 108 IPR013083 -
Ssu5g1701 239 CDD RING-HC_AtRMA_like 30 79 - -
Ssu5g1701 239 MobiDBLite consensus disorder prediction 123 162 - -
Ssu5g1701 239 SMART ring_2 32 78 IPR001841 -
Ssu5g1701 239 ProSiteProfiles Zinc finger RING-type profile. 32 79 IPR001841 -
Ssu5g1701 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 2 239 IPR045103 GO:0005783|GO:0006511|GO:0061630
Ssu5g1701 239 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Ssu5g1701 239 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3 2 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1701 Ssu-Chr5 51517471 51518190 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1701 18 225 C3H Transcription Factor Family AT4G27470 41.038 2.50e-44 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1701 K10666 - gmx:100779793 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1701 5 51517471 51518190 Ssu1g0422 1 9755997 9756707 PCT