Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1699 ATGCAAAGTCAACagatagagaaagaagaagacGATGAAGGCCCACCTCCGGGATGGCTACCCATCCCCACTCAGCCGCCGCCGCCGCCCCCACGTCCCTCCGGTTGGGCTCAAATGGTTTGCGGTTCTTGTCGTCGCCTGCTTTCATATCCACGAGGTGCCAAACATGTCAAATGTTCATGCTGTCAGACTGTCAACATTGTATTAGAAGCTGATCAGGTTGGGCAAGTTAAGTGTGGCAGTTGTGCAGTATTGCTAATGTACCCATATGGTGCTTCACAAGTTAGATGTTCCTCGTGCCGGTTTATGACAGAAATTGGGGCACACAACAAGCTGCCTCCATGGTCTGTACATCAAAGGACACCAACTCCTCCAAAAACTGGTTGTTAG 390 0.4846 MQSQQIEKEEDDEGPPPGWLPIPTQPPPPPPRPSGWAQMVCGSCRRLLSYPRGAKHVKCSCCQTVNIVLEADQVGQVKCGSCAVLLMYPYGASQVRCSSCRFMTEIGAHNKLPPWSVHQRTPTPPKTGC 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1699 129 MobiDBLite consensus disorder prediction 1 35 - -
Ssu5g1699 129 MobiDBLite consensus disorder prediction 1 15 - -
Ssu5g1699 129 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 38 68 IPR005735 -
Ssu5g1699 129 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 76 103 IPR005735 -
Ssu5g1699 129 PANTHER PROTEIN LOL2 25 125 - -
Ssu5g1699 129 Pfam LSD1 zinc finger 41 65 IPR005735 -
Ssu5g1699 129 Pfam LSD1 zinc finger 79 102 IPR005735 -
Ssu5g1699 129 MobiDBLite consensus disorder prediction 16 35 - -
Ssu5g1699 129 PANTHER PROTEIN LSD1 25 125 IPR040319 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Ssu5g1699 zf-LSD1 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1699 - - gmx:100780865 222.246