Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1690 ATGGATGAAGATAGCAGCAATTCTTGGATAAGGAGAGCCAAATTCTCCCACACAGTGTGTCACCGGTTGGATTATTCCAGTTCCAGATTAGGCTCTTTTAGCATTCAGCCGAGGGCACAACACAGTTCAGGTCTGAAATCAAGGCCAGAAGTAACTTTTGTTTCCAAGGCCTCTTCGCAGGTTCAGAAAAAGCCCATAATGAGCAAGCAGAGATCTTTGTCCCCTTTGTCTGAAACCTCTCTCTCTGAAACCTTCAAGGAAGCCCGACATGAGCAGAAAAGGTTCTCAACACCTGGTCCAAGGAGGAAAGAGCAGGAGAAGAGAATCATGGGGAAGTTACTCAACAAGGATTCTCATGTGTCCAATTCTAAATCCCCTTACAGCAGTCCAATTACTAAATCCCCTTACAACAGTCCAATTAGGCACCTGGCTTCAATGAAATTAAGCGACAAGTCAAAACAGCGCAAGGATTCAGGATGGACAAAGTATTTTGACCATGGTGGAGGAAAGGTTACTGCAGTGGAGACAGCTGAGGAATGGAATGTTGACCTCTCTAAGCTCTTTGTTGGTGTTAGGTTTGCCCATGGGGCTCACAGTAGGCTTTACCATGGCATGTATAAGGACGAACCTGTTGCTGTAAAAATTATCAGGGTACCAGatgatgatgaaaatggaaCTTTGGCTGATCGATTAGAGAAACAATTCATTAGAGAAGTCACGCTTTTATCTCGTCTCCACCATCAAAATGTTATAAAGTTCGTAGCAGCATGCAGAAAGCCACCTGTTTATTGTGTTATCACAGAATATCTATCAGAAGGTTCCTTGAGGGCATATTTGCATAAGTTGGAGAGAAAAACTATTCCTCTACAGAAGCTAATTGCTTTTGCTCTGGATATTGCTCATGGAATGGAATATATACACTCTCAAGGTGTCATTCACCGAGACCTTAAACCAGAGAATGTCCTTATTAGTGAAAACTTTCACCTTAAAATTGCTGATTTTGGCATTGCTTGTGAGGAAGCATACTGTGACTTATTTGCTGATGATCCTGGTACCTACCGCTGGATGGCACCTGAGATGATCAAACGAAAATCATACGGGAGAAAGGTTGATGTATATAGTTTTGGGCTTATCTTATGGGAAATGGTGACTGGAACTATACCATATGAGGATATGACTCCCATCCAGGCTGCTTTTGCAGTAGTAAATAAGAATTCAAGGCCAGTTATTCCTTCAGACTGTCCACCTGCAATGCGAGCTTTAATTGAGCAATGTTGGTCTTTACATCCGGACAAGAGGCCCGAGTTCTGGCAGGTTGTTAAGGTATTAGAACAATTTGAATCTTCACTTGCTCGTGATGGAACTCTGACTCTGGTACAAAACCCTTGTTGCCAAGATCATAAGAAAGGGCTTCTTCATTGGATTCAAAAGCTTGGTCCCGTGCATCAAAATAATGGCCCTGTGCCTAAACCCAAATTTACATGA 1485 0.4222 MDEDSSNSWIRRAKFSHTVCHRLDYSSSRLGSFSIQPRAQHSSGLKSRPEVTFVSKASSQVQKKPIMSKQRSLSPLSETSLSETFKEARHEQKRFSTPGPRRKEQEKRIMGKLLNKDSHVSNSKSPYSSPITKSPYNSPIRHLASMKLSDKSKQRKDSGWTKYFDHGGGKVTAVETAEEWNVDLSKLFVGVRFAHGAHSRLYHGMYKDEPVAVKIIRVPDDDENGTLADRLEKQFIREVTLLSRLHHQNVIKFVAACRKPPVYCVITEYLSEGSLRAYLHKLERKTIPLQKLIAFALDIAHGMEYIHSQGVIHRDLKPENVLISENFHLKIADFGIACEEAYCDLFADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWEMVTGTIPYEDMTPIQAAFAVVNKNSRPVIPSDCPPAMRALIEQCWSLHPDKRPEFWQVVKVLEQFESSLARDGTLTLVQNPCCQDHKKGLLHWIQKLGPVHQNNGPVPKPKFT 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1690 494 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 4 470 - -
Ssu5g1690 494 SMART serkin_6 187 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1690 494 Pfam Protein tyrosine and serine/threonine kinase 193 443 IPR001245 GO:0004672|GO:0006468
Ssu5g1690 494 PANTHER TYROSINE KINASE FAMILY PROTEIN 4 470 - -
Ssu5g1690 494 SUPERFAMILY Protein kinase-like (PK-like) 173 443 IPR011009 -
Ssu5g1690 494 MobiDBLite consensus disorder prediction 56 82 - -
Ssu5g1690 494 MobiDBLite consensus disorder prediction 116 138 - -
Ssu5g1690 494 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Ssu5g1690 494 PRINTS Tyrosine kinase catalytic domain signature 370 392 IPR001245 GO:0004672|GO:0006468
Ssu5g1690 494 PRINTS Tyrosine kinase catalytic domain signature 351 361 IPR001245 GO:0004672|GO:0006468
Ssu5g1690 494 PRINTS Tyrosine kinase catalytic domain signature 305 323 IPR001245 GO:0004672|GO:0006468
Ssu5g1690 494 PRINTS Tyrosine kinase catalytic domain signature 267 280 IPR001245 GO:0004672|GO:0006468
Ssu5g1690 494 PRINTS Tyrosine kinase catalytic domain signature 414 436 IPR001245 GO:0004672|GO:0006468
Ssu5g1690 494 Gene3D Transferase(Phosphotransferase) domain 1 272 469 - -
Ssu5g1690 494 Gene3D Phosphorylase Kinase; domain 1 175 271 - -
Ssu5g1690 494 CDD STKc_MAP3K-like 194 443 - -
Ssu5g1690 494 MobiDBLite consensus disorder prediction 56 138 - -
Ssu5g1690 494 ProSiteProfiles Protein kinase domain profile. 187 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1690 494 MobiDBLite consensus disorder prediction 83 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1690 Ssu-Chr5 51332259 51335285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1690 1 494 MAP Kinase Kinase Kinase AT5G58950 57.757 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Ssu5g1690 PK_Tyr_Ser-Thr 6.2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1690 - - gmx:100784454 932.939