Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1688 ATGGATAACAACTCTAGTTCATCTAGAAGTGATAGAAAATTCATTGAGAGGAATAGAAGAAATCAAATGAAAGCTCTTTTCTCCAAGCTCAACTCAGTTGTGCCTCATCAAAGCTCAGGGGAGACCACTTCGCGGCCAGATCAGATAGGCGAAGCCACAAACTACATAAAGAATTTACAGATTAAGTTGgagaaaatgaaggagaaaaggaaCAACCTAATAGACATTGAAAGGTCAAAAAATGCTAGCATGAATATTATGGGGTTGAAGTCTCCACAATTTAAGATCCAGCAAATGGGTTCAGCCTTAGAGGTTGTTCTAGTAACTGGGTTAGCCGATTATCAGTTCGTGTTTAATGAGACCATTCGTGTTCTTCAAGAAGAAGGATCAGATGTTGTTAATGCCAGTTATACAGTTGTTGAAAATGCAGTTTTCCATACAATACACTGTCAGGTAGGGGAATCTGCCAATGGAGCTTTGAGGATATCTGAGGAAATAAAGAAGTTTCTGTATCATTAA 519 0.368 MDNNSSSSRSDRKFIERNRRNQMKALFSKLNSVVPHQSSGETTSRPDQIGEATNYIKNLQIKLEKMKEKRNNLIDIERSKNASMNIMGLKSPQFKIQQMGSALEVVLVTGLADYQFVFNETIRVLQEEGSDVVNASYTVVENAVFHTIHCQVGESANGALRISEEIKKFLYH 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1688 172 PANTHER TRANSCRIPTION FACTOR BHLH162 1 171 - -
Ssu5g1688 172 MobiDBLite consensus disorder prediction 30 51 - -
Ssu5g1688 172 Gene3D - 1 88 IPR036638 GO:0046983
Ssu5g1688 172 Pfam Helix-loop-helix DNA-binding domain 9 60 IPR011598 GO:0046983
Ssu5g1688 172 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 171 IPR015660 GO:0003700|GO:0006357
Ssu5g1688 172 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 72 IPR036638 GO:0046983
Ssu5g1688 172 SMART finulus 13 65 IPR011598 GO:0046983
Ssu5g1688 172 Coils Coil 49 76 - -
Ssu5g1688 172 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 7 59 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1688 Ssu-Chr5 51290519 51291223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1688 3 170 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 42.308 7.81e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu5g1688 HLH 3.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1688 - - gmx:100810793 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1688 5 51290519 51291223 Ssu1g0437 1 10085652 10092041 PCT