Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1679 ATGGCGGCACCTTCCCTCTCGTCCGCTCTGAattccctctcctctctctccctcccCACCTCTTCCCGCTTCTCTCTCCTCCCCACACCGAGCCATAAACTCTCCCTCCTCAAACCCCAACACCGCCCCTCCCTCCTCTCCGCCACCCCCATTGTTCCCAAATCGAAGCCCTCCGACGACATCGACACCTCCTTCTTCGACTCCGTGAACCCTCTGGACGACATCACCTTCAACCCGCCGGAGCCCCCGGAGGGCTTCGTTCCCCCTCCCTCCTTTGACGACGGCCCCCTCGAGACCGAGGAGGAAATCGCCGCCGCCTACGAGGAACTCTACGGCCCCGCCTACAGCGGAGTCTCCGTCCTCGGCAACGACATCTACGTCATGGACGCCAAGGTCAAGAGGGACACCGGCTTCGGCTCCAGAGCCAAGAAGGAGAAGGTTCGCGACGGCTTCGAGGAGAGGGTCGTCCAGGTCAGGAGGGTCACCAAGGTTGTTAAAGGAGGGAAGCAGTTGAGGTTCAGGGCTGTCGTTGTTGTCGGCGACAAGAAGGGACAGGTCGGTGTCGGAGTCGGCAAGGCCAAGGAAGTTATTGCGGCTGTCCAGAAGTCTGCGGTGAATGCCAGGAGGAACATCGTCAAGGTGCCTATGACTAAGTACTCTACTTTTCCCCATAGAGCTGATGGAGATTATGGAGCAGCAAAGGTGATGCTTAGACCTGCGTCTCCTGGTACTGGAGTTATTGCAGGCGGGTCTGTGAGAATTGTTCTTGAAATGGCAGGAGTTGAGAATGCTTTGGGAAAGCAACTAGGGAGTAATAATGCACTCAACAATGCCAGAGCGACTGTTGTTGCTGTGCAGAAGATGAGGCAGTTTCGTGAGGTTGCCGAGGAGCGTGGGATTCCAATGGAAGAATTGTGGAAGTAA 924 0.5541 MAAPSLSSALNSLSSLSLPTSSRFSLLPTPSHKLSLLKPQHRPSLLSATPIVPKSKPSDDIDTSFFDSVNPLDDITFNPPEPPEGFVPPPSFDDGPLETEEEIAAAYEELYGPAYSGVSVLGNDIYVMDAKVKRDTGFGSRAKKEKVRDGFEERVVQVRRVTKVVKGGKQLRFRAVVVVGDKKGQVGVGVGKAKEVIAAVQKSAVNARRNIVKVPMTKYSTFPHRADGDYGAAKVMLRPASPGTGVIAGGSVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMRQFREVAEERGIPMEELWK 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1679 307 Gene3D - 141 212 - -
Ssu5g1679 307 Gene3D - 217 306 IPR014721 -
Ssu5g1679 307 SUPERFAMILY Ribosomal protein S5 domain 2-like 221 299 IPR020568 -
Ssu5g1679 307 ProSiteProfiles S5 double stranded RNA-binding domain profile. 151 214 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ssu5g1679 307 Hamap 30S ribosomal protein S5 [rpsE]. 132 304 IPR005712 GO:0003735|GO:0006412|GO:0015935
Ssu5g1679 307 SUPERFAMILY dsRNA-binding domain-like 147 216 - -
Ssu5g1679 307 TIGRFAM rpsE_bact: ribosomal protein uS5 150 304 IPR005712 GO:0003735|GO:0006412|GO:0015935
Ssu5g1679 307 PANTHER RIBOSOMAL S SUBUNIT 10 307 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ssu5g1679 307 ProSitePatterns Ribosomal protein S5 signature. 168 200 IPR018192 -
Ssu5g1679 307 Pfam Ribosomal protein S5, N-terminal domain 151 215 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Ssu5g1679 307 PANTHER 30S RIBOSOMAL PROTEIN S5, CHLOROPLASTIC 10 307 - -
Ssu5g1679 307 Pfam Ribosomal protein S5, C-terminal domain 228 298 IPR005324 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1679 151 291 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 32.215 2.02e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1679 K02988 - gmx:100787105 436.032