Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1678 ATGGTGACAGACAAACAAAACAGAAACACCAATGTTTTTTACACCCTAGATGGGAAGAGGCTAGAAGAAATTTTGACAAAGGAGTTAAAGAATAGTGACGTTAACATCCTAGGCCGCATTGTGCTCCCAAAGAAGGAGGCTGAGATGAATCTTCCGACACTACAGGACAAGGAGGGAATAGATGTTGTGCTTAAGGATGTATATTCTAAGCTACAATGGAGCATGAAATACAAGTAA 237 0.4008 MVTDKQNRNTNVFYTLDGKRLEEILTKELKNSDVNILGRIVLPKKEAEMNLPTLQDKEGIDVVLKDVYSKLQWSMKYK 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1678 78 Gene3D - 13 78 IPR015300 -
Ssu5g1678 78 CDD B3_DNA 24 78 IPR003340 GO:0003677
Ssu5g1678 78 SUPERFAMILY DNA-binding pseudobarrel domain 24 78 IPR015300 -
Ssu5g1678 78 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR LEC2 ISOFORM X1 5 78 - -
Ssu5g1678 78 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 5 78 IPR044800 GO:0003700
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1678 15 78 B3 DNA Binding Superfamily AT1G28300 62.500 4.29e-21 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1678 - - gmx:102662409 105.916