Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1672 ATGGACACAAGCAGGTCTGAGGGAAAGAGGGTCTTGAGGTACAAAGAGGAAGATGATgaggatgaagaagaagaggaagaggtgaGTGAGATGGATTTTGGAGAAGATGGAAGGAGGAATAAGAGAGTAATGACAGATCTCTATGGAAAGAGAGGGTCCAAAGCTGGAGGCTCAATGCCACCTTCTTGTCAGGTGGATAATTGTGATGCTGATCTAAGTGAAGCTAAGCAGTATCACAGAAGACACAAGGTTTGTGAGTATCATGCCAAGGTTCCTTCCGTACACATGGCGGGGCTGCGACAAAGGTTTTGCCAACAATGTAGCAGGTTCAGAAACCCTAAtctgtttgaattaaaatggaattttgtGAATCTGATTGTGCGTATACTTATTGTTTGCATATCTTCTATTGAAGGTCAATCTTTGCTGTGA 432 0.3843 MDTSRSEGKRVLRYKEEDDEDEEEEEEVSEMDFGEDGRRNKRVMTDLYGKRGSKAGGSMPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKVPSVHMAGLRQRFCQQCSRFRNPNLFELKWNFVNLIVRILIVCISSIEGQSLL 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1672 143 MobiDBLite consensus disorder prediction 1 40 - -
Ssu5g1672 143 Pfam SBP domain 63 116 IPR004333 GO:0003677
Ssu5g1672 143 Gene3D - 53 119 IPR036893 GO:0003677|GO:0005634
Ssu5g1672 143 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 16 110 IPR044817 GO:0003677
Ssu5g1672 143 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
Ssu5g1672 143 MobiDBLite consensus disorder prediction 17 31 - -
Ssu5g1672 143 SUPERFAMILY SBT domain 61 117 IPR036893 GO:0003677|GO:0005634
Ssu5g1672 143 MobiDBLite consensus disorder prediction 1 16 - -
Ssu5g1672 143 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 16 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1672 Ssu-Chr5 51050787 51051218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1672 49 117 SBP-box Gene Family AT1G53160 60.870 4.80e-23 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu5g1672 SBP 7.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1672 - - gmx:100527199 179.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1672 5 51050787 51051218 Ssu1g0452 1 10450452 10452262 PCT