Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1671 ATGGCGGAGATTTCAACTTCAGGGTACAAGGAATACGTGGCTGGCTTGCTCGCTGGTGTTGCCACTGTAGTCACTGGCCACCCCTTTGACACCGTTAAGGTGAAGCTGCAAAAGAACAATACAGAAGCACATATGATTCAGTATAGAAATGGGTTGCATTGCACTGCTAGGATATTGAAGACTGAAGGAATCAAAGGACTTTATAGAGGAGCAACATCATCTTTTGTTGGGATGGCAGTTGAAGGATCACTCTATTTTGGCATTTATTCCCAGACAAAACTGTACCTTCAGGGGGAAGTTCAAAGTGGGGAACCACGGCCTCAAGTGGTAATACCATCTGCAGCTTTTAGTGGTGCCATCAACAGTTTTGTGTTAGGTCCAACAGAGCTGATAAAGTGTAGGATGCAGATACAAGGCACTGACTCTTTGGTTCCTAAGTCCAGTAGATACAGTAGTCCCCTTGATTGTGCCCTTAAAACTGTAAAAACTGAAGGGGTGAAAGGAATTTTTCGTGGTGGTTCTACAACATTGCTTAGAGAATCTATAGGGAATGCTGTCTTTTTCAGTGTATATGAATATGTGCGTTATCACTtgcattcaaatttcaaagctGCTTCATCCAATTACAGCAACCTGATTGATATTGGAATTGGGATCGTTACTGGTGGCCTTGGTGGTGTGGCTTTCTGGTTGACGGTTTTGCCTCTTGATGTGGCAAAGACTTTAATTCAGACAAACCCTGATAAAAACTGTCCAAGAAATCCTTTTCGGGTCTTGAGTTCAATCTACCAAAGGGCTGGATTGAAGGGGTGCTATACAGGTTTGGGTCCTACTATAAGTCGAGCATTTCCTGCTAATGCTGCAACGATTGTTGCGTGGGAGCTAGCATTGAAAATGCTAGGCATTAAGCATGACTGA 918 0.427 MAEISTSGYKEYVAGLLAGVATVVTGHPFDTVKVKLQKNNTEAHMIQYRNGLHCTARILKTEGIKGLYRGATSSFVGMAVEGSLYFGIYSQTKLYLQGEVQSGEPRPQVVIPSAAFSGAINSFVLGPTELIKCRMQIQGTDSLVPKSSRYSSPLDCALKTVKTEGVKGIFRGGSTTLLRESIGNAVFFSVYEYVRYHLHSNFKAASSNYSNLIDIGIGIVTGGLGGVAFWLTVLPLDVAKTLIQTNPDKNCPRNPFRVLSSIYQRAGLKGCYTGLGPTISRAFPANAATIVAWELALKMLGIKHD 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1671 305 Gene3D Mitochondrial carrier domain 111 304 IPR023395 -
Ssu5g1671 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 299 IPR018108 -
Ssu5g1671 305 Gene3D Mitochondrial carrier domain 3 110 IPR023395 -
Ssu5g1671 305 PANTHER - 6 132 - -
Ssu5g1671 305 PANTHER - 132 304 - -
Ssu5g1671 305 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 6 132 - -
Ssu5g1671 305 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 132 304 - -
Ssu5g1671 305 SUPERFAMILY Mitochondrial carrier 8 294 IPR023395 -
Ssu5g1671 305 Pfam Mitochondrial carrier protein 219 300 IPR018108 -
Ssu5g1671 305 Pfam Mitochondrial carrier protein 9 97 IPR018108 -
Ssu5g1671 305 Pfam Mitochondrial carrier protein 113 200 IPR018108 -
Ssu5g1671 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 105 197 IPR018108 -
Ssu5g1671 305 ProSiteProfiles Solute carrier (Solcar) repeat profile. 6 95 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1671 Ssu-Chr5 51010034 51015398 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1671 4 300 Antiporters AT1G79900 30.693 9.19e-35 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1671 K15109 - gmx:100815087 540.806