Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1666 ATGGCACTAAATGATAAGAAGAAGAGTGCTAGAGAAGGAGAGGTGCATTATCGAGGAGTGAGTAGAAGGCCATGTGGCACATACGCCGCCAAGATCAGAGATCCCAACAAGAGGAAGCGTGTGTGGCTTGGCACCTATATCTCCGCTGTGGATGCTGCCATGGCCTATGACACTGCCGCCATCAAGATTCGTGGCCCTCACAAGGCTAAAACCAACTTCCCTGTCCATTATTATTCCCACTACAATAATGTGGTCATGCAAATCCCCACCATCTTCTACTCCTCAACATCAATACACCCTCCCCCACATGTGCCTTCACCCTACCATGTCACGTACTCTATGAATCATCACCGAAGCTACTTTGATTCCTCCTTCGCGCTTGCTGTTAAGGCTGAAAAAAAGCCTGTGCTTGATGTGGATCTTAACTACCCTCCTCCCCAAGAAATCCCTTGA 453 0.4857 MALNDKKKSAREGEVHYRGVSRRPCGTYAAKIRDPNKRKRVWLGTYISAVDAAMAYDTAAIKIRGPHKAKTNFPVHYYSHYNNVVMQIPTIFYSSTSIHPPPHVPSPYHVTYSMNHHRSYFDSSFALAVKAEKKPVLDVDLNYPPPQEIP 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1666 150 Gene3D AP2/ERF domain 15 76 IPR036955 GO:0003700|GO:0006355
Ssu5g1666 150 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 107 - -
Ssu5g1666 150 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Ssu5g1666 150 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Ssu5g1666 150 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Ssu5g1666 150 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Ssu5g1666 150 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 14 107 - -
Ssu5g1666 150 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Ssu5g1666 150 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Ssu5g1666 150 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1666 Ssu-Chr5 50878848 50879300 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1666 1 79 AP2-EREBP Transcription Factor Family AT1G03800 56.250 6.84e-23 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu5g1666 AP2 2.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1666 K09286 - dcr:108225207 89.7373