Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu5g1666 | ATGGCACTAAATGATAAGAAGAAGAGTGCTAGAGAAGGAGAGGTGCATTATCGAGGAGTGAGTAGAAGGCCATGTGGCACATACGCCGCCAAGATCAGAGATCCCAACAAGAGGAAGCGTGTGTGGCTTGGCACCTATATCTCCGCTGTGGATGCTGCCATGGCCTATGACACTGCCGCCATCAAGATTCGTGGCCCTCACAAGGCTAAAACCAACTTCCCTGTCCATTATTATTCCCACTACAATAATGTGGTCATGCAAATCCCCACCATCTTCTACTCCTCAACATCAATACACCCTCCCCCACATGTGCCTTCACCCTACCATGTCACGTACTCTATGAATCATCACCGAAGCTACTTTGATTCCTCCTTCGCGCTTGCTGTTAAGGCTGAAAAAAAGCCTGTGCTTGATGTGGATCTTAACTACCCTCCTCCCCAAGAAATCCCTTGA | 453 | 0.4857 | MALNDKKKSAREGEVHYRGVSRRPCGTYAAKIRDPNKRKRVWLGTYISAVDAAMAYDTAAIKIRGPHKAKTNFPVHYYSHYNNVVMQIPTIFYSSTSIHPPPHVPSPYHVTYSMNHHRSYFDSSFALAVKAEKKPVLDVDLNYPPPQEIP | 150 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu5g1666 | 150 | Gene3D | AP2/ERF domain | 15 | 76 | IPR036955 | GO:0003700|GO:0006355 | |
Ssu5g1666 | 150 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 14 | 107 | - | - | |
Ssu5g1666 | 150 | CDD | AP2 | 16 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Ssu5g1666 | 150 | SUPERFAMILY | DNA-binding domain | 16 | 75 | IPR016177 | GO:0003677 | |
Ssu5g1666 | 150 | ProSiteProfiles | AP2/ERF domain profile. | 16 | 74 | IPR001471 | GO:0003700|GO:0006355 | |
Ssu5g1666 | 150 | SMART | rav1_2 | 16 | 80 | IPR001471 | GO:0003700|GO:0006355 | |
Ssu5g1666 | 150 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 | 14 | 107 | - | - | |
Ssu5g1666 | 150 | Pfam | AP2 domain | 16 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Ssu5g1666 | 150 | PRINTS | Ethylene responsive element binding protein signature | 17 | 28 | IPR001471 | GO:0003700|GO:0006355 | |
Ssu5g1666 | 150 | PRINTS | Ethylene responsive element binding protein signature | 39 | 55 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu5g1666 | Ssu-Chr5 | 50878848 | 50879300 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu5g1666 | 1 | 79 | AP2-EREBP Transcription Factor Family | AT1G03800 | 56.250 | 6.84e-23 | 89.0 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Ssu5g1666 | AP2 | 2.4e-09 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu5g1666 | K09286 | - | dcr:108225207 | 89.7373 |