Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1665 ATGTGTCATATAGGGATAATGGCACCATGtcagaggaagaagaagagtggCGAAGGGATGCGTTATCGAGGAGTGAGGAAAAGGTCATCAGGCAAATACGCTATTGAGATCAGAGATCCTCTCATTAGGTACATGTGGTTCGATACCTTTAACTTTTCCATGGACACTGCCAAAGCCTATGACGTTGCCGCCATCAAGTTTCGTGGCCCTGACAAGGCCAAAACCAACTTTCCTACCTTTAAAAACGACATCAACAATGTGGTCATGCAAAACCCCACCAACATCAACTCCTCAACGTCAACACAACCTCCTCCGCATGTATCTTTGCCTAACCATGTCATGTGCTCAATGAGTCATTACCAAAGCCACTCTAATTCCTCCTTTGTGCTTGCCGTTGAGGTTGGAAAAAAGCTTGTACTTGATGTGGATCTTAACCAGTCTCCTTCCTAG 450 0.4311 MCHIGIMAPCQRKKKSGEGMRYRGVRKRSSGKYAIEIRDPLIRYMWFDTFNFSMDTAKAYDVAAIKFRGPDKAKTNFPTFKNDINNVVMQNPTNINSSTSTQPPPHVSLPNHVMCSMSHYQSHSNSSFVLAVEVGKKLVLDVDLNQSPS 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1665 149 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Ssu5g1665 149 SUPERFAMILY DNA-binding domain 21 78 IPR016177 GO:0003677
Ssu5g1665 149 CDD AP2 21 78 IPR001471 GO:0003700|GO:0006355
Ssu5g1665 149 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 122 - -
Ssu5g1665 149 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 10-RELATED 21 122 - -
Ssu5g1665 149 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Ssu5g1665 149 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1665 Ssu-Chr5 50830397 50830846 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1665 1 148 AP2-EREBP Transcription Factor Family AT1G28370 36.842 4.87e-20 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1665 K09286 - ath:AT1G28370 84.3445