Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1664 ATGGCACCAATTGTAAgtgagaggaagaagaagaatggtGAAGAGGTGCGTTATCGAGGAGTGAGGAGAAGGACATGGGGCAAATACGTCGCCGAGATTAGAGATCCCAACAATAAGACGCGCGTATGGCTCGGCACCTTTGACACTGCCATAGATGCTGCCAAAGCCTATGACGCCGCCGCCATCGAGTTTCGTGGCCTCGACAAGGCCAAAATCAACTTCCCTGTCCCTAAAAACTACAACAACAATGTAGTCATGCAAACCCCCACCACCCTCAACTCTTCACCAACACCACACCCTCCCCTGCACGTGCCTTCGCCTAACCATGTCACGTGCTTGATGAGTCATCACCGAAGCCACTCTAATTCCTCCTCTGCGCTCGTTGTTGAGGTTGGAAAAAAGCTTGTGTTTGACGTGGATCTTAACCTTTCTCCTCCCCAAGAAATCCCTTAA 453 0.4834 MAPIVSERKKKNGEEVRYRGVRRRTWGKYVAEIRDPNNKTRVWLGTFDTAIDAAKAYDAAAIEFRGLDKAKINFPVPKNYNNNVVMQTPTTLNSSPTPHPPLHVPSPNHVTCLMSHHRSHSNSSSALVVEVGKKLVFDVDLNLSPPQEIP 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1664 150 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Ssu5g1664 150 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Ssu5g1664 150 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Ssu5g1664 150 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Ssu5g1664 150 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Ssu5g1664 150 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Ssu5g1664 150 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Ssu5g1664 150 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 107 - -
Ssu5g1664 150 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1664 Ssu-Chr5 50825469 50825921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1664 3 107 AP2-EREBP Transcription Factor Family AT3G15210 52.381 4.52e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu5g1664 AP2 3.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1664 K09286 - ath:AT1G28370 102.064