Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1653 ATGGATTCTGACTTCTGGACCTCGCGTCTTGCCGCCGCCAAACGCCAATACACGCTTCAGCATCACCATCCAAATTCTCATTTAGATCGGTTGGGAATCGATGATTTTGATGTGGAAGAAGAGGTGCGACCCGATTTCCCTTGCCCGTATTGTTACGAAGACTTTGACATCGCATCTTTGTGTTCTCATCTTGAAGACGAACATTCCTGTGAATCGAGAGTCACTATTTGTCCTATATGCTCCGTTAAAGTTGCACGGGACATGTTAAGTCACATAACGCTGCAGCATGGGCACTTATTTAAGATACAGAGAAGGCGCAGGTTAAGAAGAGTGGCTATTCCAAACAGTCAGACATTGTCTCTTTTGGGTCGAGATCTTCGTGAGGCTCATCTACAGGTGCTActtggtggtagtggtggtggatACCGGTCAAGCAGTGCAACAGTGTCTAATGCTGCTACTGATCCATTCCtatcctcatttattttgaatttcccTGCTTGTGAAgcagaagaaatttcaaaatctgTGGTAACAAGTGCTGAGGATTCGTCTGCCAAAAATGTGACACCTGAACATATTTGGAAATCAAGTTTTGATCCCTCCTTGAGTACTGAAGAGCGGGAGAAAAGGATGAGACAAGCTGCTGGGAGATCTGGTTTTGTGCAGGACTTGTTTCTTTCAACTTTGCTAGGCGACTAA 702 0.4117 MDSDFWTSRLAAAKRQYTLQHHHPNSHLDRLGIDDFDVEEEVRPDFPCPYCYEDFDIASLCSHLEDEHSCESRVTICPICSVKVARDMLSHITLQHGHLFKIQRRRRLRRVAIPNSQTLSLLGRDLREAHLQVLLGGSGGGYRSSSATVSNAATDPFLSSFILNFPACEAEEISKSVVTSAEDSSAKNVTPEHIWKSSFDPSLSTEEREKRMRQAAGRSGFVQDLFLSTLLGD 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1653 233 Pfam Drought induced 19 protein (Di19), zinc-binding 45 97 IPR008598 -
Ssu5g1653 233 Pfam Stress-induced protein Di19, C-terminal 119 230 IPR027935 -
Ssu5g1653 233 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 232 - -
Ssu5g1653 233 SUPERFAMILY TRAF domain-like 46 108 - -
Ssu5g1653 233 PANTHER PROTEIN DEHYDRATION-INDUCED 19 1 232 IPR033347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1653 Ssu-Chr5 50704906 50707716 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu5g1653 Di19_C 6.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1653 - - gmx:100792230 421.394