Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1649 ATGGAGGGCGAGGGTTGTTCAGAGGGAGAGAAAAATCGGAAAAGGGGTGGCACAGATGATGATAGCAATgagaataacaacaataacaacggAAGCAGTAGCAAGATTGTGAATTCTAATGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAAACCCCTTTTCAACTTGAAACCCTCGAGAAAGCTTATGCTGTGGATAATTATCCTTCGGAGGCGATGAGGGCAGACCTTTCTGAGAAATTGGGGTTGTCGGATCGGCAGCTTCAGATGTGGTTTTGCCACCGGAGGTTGAAGGACAAGAAGGACTTGCCGTCCAAGAAGCCGCCACCGCCGAGGAAGGTGCCAGCAGAGCCTTTGCCAGATTCGCCTAAGGATGACCCCAGGTTGGGCCCTGAGATTGGTAATGAGTATGGATCCGGGTCGGGTTCAGGTTCCAGCCCGTACGCCCGAGTGGAGCCCCTAAATGTGGTTCCCCGGGGTGTGCCCGGTTATTATGAGTCCCCACAGGCTATGATGGAGCTTAGAGCAATTGCTTGTGTCGAGGCGCAGTTAGGGGAGCCATTGAGGGAAGATGGACCAATTCTAGGAGTGGAGTTTGATCCATTGCCACCAGATGCCTTTGGGGCACCTATAgCAGTTACCGAACAGCAGAAGCTACCTAGTGTTGCCTATGAGAGTAAACTATATGAAAGACATGATGTTAGAACAAATAAGGCTATGGCAAGGACATTTCGTGACTATCAATTTCTACCAAATCAACCTGGCATTAGGTCTGATGCTTTTGGACAGTTCAGCCAATCTCATTTACGTGATCCAATGGAAGGTCCTGCCAGAAATCCTCCTTTTACACATGGAACTGAACAGCTACCTAGAATTCATGCTACTCAAGGTCATTCTTCTCGTGCTCGTCTTTTGTCTCAACAAGACAAGCAATTGATTCCCTATCAATCTTCTTCTCGGGATGATGATGTTGCCCCCCAAAGGGAATTGTACCCAAACATAGCTAATGTTGGAATGAACTCTCCTCACTTTGCTGATCGCCAAATTGTTGGGCCAGAGAATCTCAATGCTCTACCGAGTGGACAAGTTTTGCATAACAATGCAATGCGGATTGAGAAGAAACGAAAGagTGATGATGCCCGAGATGTTGAAGCCCAGGAGATGAAAATCCGGAAAGAGCTTGAGAAACAAGATAACCTTCGACGAAAGAGTGAAGAGCGgacaagaaaagaaatggagaaaCAAGATCGTGAAAGAAGGAAGGAAGAAGAGAGGTTGATGCGTGAGAGACAGCGAGAGGAAGAAAGAGCAAGACGTGAGCAAAAACGTGAAATTGAGCGAAGGGAAAAGTTTTTGCTGAGAGAAAATTTAAGAgcAGAGAAAATGAGGCAAAGAGAAGAGCTTCGCAAAGAGAAAGAAGCAGAGAGAAGGAAAGCTGCTCTTGAGAAGGCAACTGCCCGTAGAATAGCTAAGGAATCTATGGAACTTATTGAGGATGAACAGCTGGAAATGATGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATCCATCTTGATTTTGATACTCTGCAAAACCTTGAGTCATTTAGGGATTCATTGAGTGTTTTCCCACCAAAGAGTGTAAAGCTAAAAAAACCATTTGCAATCAAACCCTGGATCAACTCAGAAAAGAATGTTGGCAATCTTCTCATGGTTTGGAGATTTTTGATTACTTTTGCTGATGTTCTGGAGTTATGGCCTTTTACACTAGATGAGTTTATTCAAGCATTTCACGACTACGATTCAAGATTGTTGGGTGAGATACATGTTGCTCTTCTTAAGGTGATAATAAAAGACATAGAAGATGTTGCAAGGACACCTACAGGATTAGGAATGAATCAGAATGGTGCTGCTAACTCTGGAGGTGGCCATCCAGAGATTGTGGAAGGGGCATATGCATGGGGTTTTGATATACGAAATTGGCATAAGCACTTAAATCTATTGACATGGCCAGAAATTTTCCGACAGCTAGCATTATCTGCAGGATATGGACCACAGTTGAAGAAAAGAAGTATTAGCTGGTCATATGCAAATGATAAAGACGAGGGCAGAAGTTATGAAGATATCATTTCTACACTTCGTAATGGTTCAGCGGCTGAAACTGCAGTTGCAAAAATGCACGAGAAAGGTCTGTTAGCCCCTCGAAGATCTAGGCATCGATTAACTCCTGGTACAGTTAAGTTTGCAGCATTTCATGTTCTCTCGCTTGAGGGTGACAAGGGATTGACAGTACTAGAGCTTGCTGAAAAAATTCAGAAATCTGGTCTTCGAGACCTGACCACCAGCAAGACACCTGAGGCATCAATTTCTGTTGCTTTAACAAGGGATGCCAAGCTTTTTGAAAGAATAGCTCCATCAACATATTGTGTACGTGAAGCATTTAGAAAGAATCCTGCTGATGCTGAGTCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCCGGGGAGGATGctgatgatgttgaaagagaAGAGTCAGAGAGTGATGAAATTGATGAGGATCCTGAAGTTGATGATTTGGTAAATCCGTCAAGTGCTAACAAAACATCTGAACAGTGTGATGATTTCTCAtcaaatggaaaagaaaatttggGTCATGATGTTGAACTTCAAAGTGAGTTTGATAAGGATCTACCTTGTCTTCCTGAGAGTGGTTCCCAGAATGCTGATGCTCCAATTGCTGTCACTGGACAAACTGGTGCTTGTGAAGATCTGAATGTTGGAAATCTTGGTGAAGATAATATGGAAATTGATGAAAGCAAGCCTGGAGAGTCATGGGTTCAAGGACTTGCAGAAGGAGAATATTCTGATCTTAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGTGTTGGTTGGGGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTCGAGGATCGTCTGGAAGCTGCAAATGCTCTGAAGAAACAAATGTGGGCAGAAGCACAACTAGATAAAGTTCGTCTAAAAGATGATACTTTCAGTAAATCAGATTTTCCATCTATCAATGGGAATAAAGTTGAAATACAATACTCTTGTCCTGCCATGGAGGGCAACCAAAGCCCATTGATTGGCATTAACATtgccaacaataataataatgtgccCTCTCCCAGCATTGCAGAAAATCAAAAAGCAGCTTCTGGTATACAGAGTGTGTCTATTGAAAAGCACTCTTCAGTTCAAGATCTCTGCACTGGTCCGGATAACCCTCAGAATCAGACTCAGTCATTTGCACAATATTCAAAAAGGTCACGTTCTCAGTTGAAATCTTATATTTTCCACATAGCAGAGGAGATGTATGTCTACAGGTCCTTACCCCTTGGGCAAGATCGCAGACGTAACCGATATTGGCAATTTGTTGCATCTGCTTCTTCCAACGATCCTGGCTCTGGCAGAATCTTTGTTGAATATCATGATGGCAGTTGGAGGCTTATTGATACTGAAGAGGTCTTTGATGCACTTCTGAATGCACTTGATTCACGTGGGATCAGGGAATCTCATTTGCGTCTAATGTTGCAAAAGGTTGAGAGTTCCTTTAAGGAAAATGTTCGTAAGTATACGCAATGTTCCAAAATTGGAAGCAGAGGTGAAACGTGTGTTAAAAATGAAGCCGATGAAACAGATTCCAGTCCTGATTGCCATACTGGATCTGACAGTCCTAGCAGTACCCTTTGTGGCTTGAACTCTGACACTTCGGAAACTTCATCATCCTTCAAAATCGAGCTTGGGAAAAGTGAGAGTGACAAGAAATCTGCCTTGAGAAGGTAtcaagattttcaaaaatggaCGTGGAAAGAATGCTATAACTCATCAATATTGTGTGCAATGAAATATGGGAAAAAGAGATGCAAACCTCAGGTTGTCATCTGTGATATCTGTTTCAACCCTTATTTCTTTGAAGACTCCCATTGCAGTTGTTGCCACCGAACTTTTCCCTCAAATAatggatttaatttttctaaacatgCATTTCAATGTGGAGACAAATTATCAaaagacatttgtattttggaTTCTTCTCTTCCCTTGCGGACAAGATTGCTTAAGGCACTGCTAGCTTTTATTGAGGTATCTGTTCCACCTGAAGCATTTCAATCAAAATGGACAGAAGATATTAGGAGGCATTGGAGTGTGAAGTTGAGCAAATCATCTTCTGTTGAGGAACTGCTACAGATATTGACCCTACTTGAGAGAGCATTAAAGCGAGACTTTTTATCGTCAACCTTCTCTACAACAGGGGAACAGTTGGGGTTGAACACAATGTCAGAGAGTGCTGCACAAACCTCTACTGATCCTGAATCAGTCACTGTACTTCCATGGGTTCCACTGACCACTTCAGCTATGTCTCTCAGACTTTTTGAGTTTGATGCATCCATCGTCTATGTACTGCACGAGAAACCTGAGCCTtgtgaagagaaagaagataggGAATACATAAAGCTTCCTTCAAGATATAATCCTTCTAAATCTAGTAAAGTGGCTGAACCAGCCGACTTGGACCATGATGAATTCATGAAAGTTAAATCTGCTCCTGTGAAAATTGTGCAAAGTAACAGTAAACGAGGACGAGGGGGTCGTGATAAAGGACGAGGGAGTCGGGATAAAGGACGGGGTAAAAAGCTATCTAAAACCAAACAAGATACTGGCTGTCGGATTGCTAAGGTCGCTAGGAATCTAAATCAAAGGATAAAACAGCAGGGAGTAGGATCACAAGGACAAGCTGGTGGACGTGGTCGCCGAACAGTCAGGAAAAGAAGAGTGGGGGAGAGAGCTGTTGAAGATTTGTTGCTGGGCCGTAGGGGTGCCACTCATAGCTCCAGCATTGGGAGAGAATCATTGAAAAGCTTGGATGAGGACTGGGATGATGAAAAGGCAAGTCCCATGACTCCCATCCACATGGGGGCTGCTAACATTAGTAACAGCACTGAAGAGGCTGAATCTGATGACAATGTCCAAGCAATGGAATCTGATGACAATGTCCAAGCAGTGGAATCTGACGACAATGGCCAAGCTGTGGAATATGATCAAGGAAACTGGGAAATAGGTTTTAATGGTACCCCCAGCAGATGGAGTAGGAATTTGGTCGGAATGAGTGATGAGGATGTGGAAGCTTCTGAAGATGACAATGACAATGGCAATGGCATTGAAGAGAATGAAGAGGAGGATTCAGAGGCTGATGCTATGAGCGAGGATTCAGATGGTACTGAAAATAGAATTGTAAATGAAGAAAGCTCAGACTCTGCTGGCTCTGAAGATTCTTCTGATTAG 5337 0.4197 MEGEGCSEGEKNRKRGGTDDDSNENNNNNNGSSSKIVNSNEGQSKPKRQMKTPFQLETLEKAYAVDNYPSEAMRADLSEKLGLSDRQLQMWFCHRRLKDKKDLPSKKPPPPRKVPAEPLPDSPKDDPRLGPEIGNEYGSGSGSGSSPYARVEPLNVVPRGVPGYYESPQAMMELRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPIAVTEQQKLPSVAYESKLYERHDVRTNKAMARTFRDYQFLPNQPGIRSDAFGQFSQSHLRDPMEGPARNPPFTHGTEQLPRIHATQGHSSRARLLSQQDKQLIPYQSSSRDDDVAPQRELYPNIANVGMNSPHFADRQIVGPENLNALPSGQVLHNNAMRIEKKRKSDDARDVEAQEMKIRKELEKQDNLRRKSEERTRKEMEKQDRERRKEEERLMRERQREEERARREQKREIERREKFLLRENLRAEKMRQREELRKEKEAERRKAALEKATARRIAKESMELIEDEQLEMMELAASSKGFSSIIHLDFDTLQNLESFRDSLSVFPPKSVKLKKPFAIKPWINSEKNVGNLLMVWRFLITFADVLELWPFTLDEFIQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPTGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNLLTWPEIFRQLALSAGYGPQLKKRSISWSYANDKDEGRSYEDIISTLRNGSAAETAVAKMHEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGDKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYCVREAFRKNPADAESILSEARKKIQIFENGFLAGEDADDVEREESESDEIDEDPEVDDLVNPSSANKTSEQCDDFSSNGKENLGHDVELQSEFDKDLPCLPESGSQNADAPIAVTGQTGACEDLNVGNLGEDNMEIDESKPGESWVQGLAEGEYSDLSVEERLNALVVLVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQLDKVRLKDDTFSKSDFPSINGNKVEIQYSCPAMEGNQSPLIGINIANNNNNVPSPSIAENQKAASGIQSVSIEKHSSVQDLCTGPDNPQNQTQSFAQYSKRSRSQLKSYIFHIAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEYHDGSWRLIDTEEVFDALLNALDSRGIRESHLRLMLQKVESSFKENVRKYTQCSKIGSRGETCVKNEADETDSSPDCHTGSDSPSSTLCGLNSDTSETSSSFKIELGKSESDKKSALRRYQDFQKWTWKECYNSSILCAMKYGKKRCKPQVVICDICFNPYFFEDSHCSCCHRTFPSNNGFNFSKHAFQCGDKLSKDICILDSSLPLRTRLLKALLAFIEVSVPPEAFQSKWTEDIRRHWSVKLSKSSSVEELLQILTLLERALKRDFLSSTFSTTGEQLGLNTMSESAAQTSTDPESVTVLPWVPLTTSAMSLRLFEFDASIVYVLHEKPEPCEEKEDREYIKLPSRYNPSKSSKVAEPADLDHDEFMKVKSAPVKIVQSNSKRGRGGRDKGRGSRDKGRGKKLSKTKQDTGCRIAKVARNLNQRIKQQGVGSQGQAGGRGRRTVRKRRVGERAVEDLLLGRRGATHSSSIGRESLKSLDEDWDDEKASPMTPIHMGAANISNSTEEAESDDNVQAMESDDNVQAVESDDNGQAVEYDQGNWEIGFNGTPSRWSRNLVGMSDEDVEASEDDNDNGNGIEENEEEDSEADAMSEDSDGTENRIVNEESSDSAGSEDSSD 1778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1649 1778 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 945 987 IPR028942 -
Ssu5g1649 1778 Coils Coil 383 403 - -
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 840 861 - -
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 1634 1649 - -
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 1517 1531 - -
Ssu5g1649 1778 Pfam DDT domain 560 614 IPR018501 -
Ssu5g1649 1778 ProSiteProfiles 'Homeobox' domain profile. 42 102 IPR001356 GO:0003677
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 1495 1570 - -
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 1587 1778 - -
Ssu5g1649 1778 SMART testlast3 558 617 IPR018501 -
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 391 441 - -
Ssu5g1649 1778 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1126 1198 IPR028941 -
Ssu5g1649 1778 PANTHER HOMEOBOX DOMAIN PROTEIN 17 1778 - -
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 1656 1670 - -
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 1 21 - -
Ssu5g1649 1778 Coils Coil 454 485 - -
Ssu5g1649 1778 Pfam Homeodomain 45 101 IPR001356 GO:0003677
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 1082 1104 - -
Ssu5g1649 1778 ProSiteProfiles DDT domain profile. 558 617 IPR018501 -
Ssu5g1649 1778 Coils Coil 405 448 - -
Ssu5g1649 1778 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 17 1778 IPR044977 GO:0006357
Ssu5g1649 1778 ProSiteProfiles HARE-type HTH domain profile. 739 808 IPR007759 GO:0006355
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 99 149 - -
Ssu5g1649 1778 Pfam HB1, ASXL, restriction endonuclease HTH domain 739 807 IPR007759 GO:0006355
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 1 55 - -
Ssu5g1649 1778 SMART HOX_1 44 106 IPR001356 GO:0003677
Ssu5g1649 1778 SUPERFAMILY Homeodomain-like 32 101 IPR009057 -
Ssu5g1649 1778 CDD homeodomain 47 99 IPR001356 GO:0003677
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 864 881 - -
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 1236 1257 - -
Ssu5g1649 1778 Gene3D - 28 103 - -
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 838 884 - -
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 22 51 - -
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 267 287 - -
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 1225 1257 - -
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 1723 1753 - -
Ssu5g1649 1778 MobiDBLite consensus disorder prediction 1543 1570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1649 Ssu-Chr5 50601178 50611381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1649 38 1707 Homeobox Transcription Factor Family AT1G28420 49.212 0.0 1337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Ssu5g1649 WSD 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1649 - - gmx:100818817 2801.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1649 5 50601178 50611381 Ssu1g0476 1 10785368 10788440 PCT