Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1648 ATGGAGTCGCGAGTGTTGTCACGCGCCGGAGCCTTGTCCTCCCTCCCTCACCTCCGCAAGCCGCCGCGGGAGGCCTGCGGCGGCCCCTCCCTCGTTCCCGTGAAGGCCGTCGGCTCCGTCGCGGACGGCGGGAATCTCATTTGGGGGAGGCAGCTCCGTCCGGCGCTGTGCTCGCCAGGCGCTGAAGAGGGACGCCGTCCTCCTGCGGCCGTGCCTCGCCGCCGCCTCCTCACCGGCCGAGGGAAACGATTCCGCCGGGTGAGaGAAGCGAAGGTTGCTCCGGTGGGGTTCTTCGAGAAGTACCCGGCTCTGGTGACcggttttttcttcttcacgTGGTACTTCTTGAACGTGATTTTTAACATCCTCAACAAGAAGATCTACAATTATTTCCCCTATCCATACTTCGTATCGGTTATCCATTTATTCGTGGGTGTGGCTTACTGTTTGGTGAGCTGGGCCGTGGGCCTTCCTAAGCGTGCTCCTATAGACTCCAACCTACTGAAGTTGCTCATTCCGGTGGCTGTGTGCCATGCATTAGGCCATGTGACCAGCAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACCCATACCGTTAAAGCTCTCGAGCCATTCTTCAATGCTGCTGCTTCACAGTTCATACTTGGCCAATCAATCCCCTTCACTTTGTGGCTGTCACTGGCTCCAGTTGTTATTGGTGTGTCAATGGCATCTTTGACCGAGCTCTCATTCAACTGGACCGGCTTCATAAGTGCTATGATTTCAAACATTTCCTTCACATACCGGAGCATCTATTCAAAGAAAGCCATGACTGATATGGATAGTACCAATATCTATGCCTACATTTCCATCATTGCTCTAATTGTCTGTATACCACCTGCCGTAATTGTGGAAGGGCCTGCACTTTTGAAGCACGGCTTCAATGATGCTATTGCTAAAGTAGGCATGGGCAAGTTCATCTCAGATCTCTTCTGGGTTGGGATGTTTTACCACCTCTACAACCAGGTGGCTACCAACACACTGGAGAGAGTGGCTCCTCTCACTCATGCAGTTGGGAACGTACTGAAACGTGTATTTGTTATTGGATTTTCAATTGTAGCCTTCGGTAACAAGATTAGCACCCAAACTGGTATAGGAACTGTCATTGCAATTGCTGGAGTGGCACTCTACTCGTTCATCAAAGCCAGGATGGAGGAAGAGAAGCGACAAGCGAAAGCCGCATAA 1227 0.5118 MESRVLSRAGALSSLPHLRKPPREACGGPSLVPVKAVGSVADGGNLIWGRQLRPALCSPGAEEGRRPPAAVPRRRLLTGRGKRFRRVREAKVAPVGFFEKYPALVTGFFFFTWYFLNVIFNILNKKIYNYFPYPYFVSVIHLFVGVAYCLVSWAVGLPKRAPIDSNLLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTVKALEPFFNAAASQFILGQSIPFTLWLSLAPVVIGVSMASLTELSFNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALIVCIPPAVIVEGPALLKHGFNDAIAKVGMGKFISDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIVAFGNKISTQTGIGTVIAIAGVALYSFIKARMEEEKRQAKAA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1648 408 SUPERFAMILY Multidrug resistance efflux transporter EmrE 146 241 - -
Ssu5g1648 408 Pfam Triose-phosphate Transporter family 105 392 IPR004853 -
Ssu5g1648 408 PANTHER BNAC02G47130D PROTEIN 33 400 - -
Ssu5g1648 408 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 104 402 IPR004696 GO:0016021|GO:0022857|GO:0055085
Ssu5g1648 408 PANTHER SOLUTE CARRIER FAMILY 35 33 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1648 Ssu-Chr5 50562563 50567534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1648 1 406 Antiporters AT5G46110 75.845 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1648 K15283 - gmx:732611 702.59