Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1647 ATGGCTTCCATGAACGGATACAGAGCAACTGAGTTGTTCCAAGCTCAAGCTCATTTATACAGAGTCATGTATAGTGGGCCGTTGACCTTGGCATCCCAATATAATCCACTACCACGGTCCAAGAGGTTATTGGGATTTATTCATCAAAATCCCACTCATATGAAGACTTTCAATGAGGCTATGGAAAGTGATTCTCAAGTAGTAAGGTTGGCTTTGAGAGATTGCAAATCTGTTTTTGAAGGCCTCGATTCCATGGTTGATGTTGGCGATGCAACTGGAAACACTGCTAAGATTATTTGTAAGGCATTTCCTAACTTAAAATACGTAGTCTTGGACCTTCCACAGGTTGTTACTGGCTTAACAGGAAGCAAAAATCTCAGTTTTGTTGGCGGGAACACGTTTAAGTCCATCCCTCAAGCTGACGCAATTTTACTCAAGTGGGCTTTACACAATTGGAGTGATGATGATTGCataaaaatactcaaaaattgTAAAGATGCCATTTCAGGCAAAGGCAAAGGAGGAAAAGTGATCATAATAGATATAGTGATAAATGAGTAG 561 0.3939 MASMNGYRATELFQAQAHLYRVMYSGPLTLASQYNPLPRSKRLLGFIHQNPTHMKTFNEAMESDSQVVRLALRDCKSVFEGLDSMVDVGDATGNTAKIICKAFPNLKYVVLDLPQVVTGLTGSKNLSFVGGNTFKSIPQADAILLKWALHNWSDDDCIKILKNCKDAISGKGKGGKVIIIDIVINE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1647 186 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 9 185 IPR029063 -
Ssu5g1647 186 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 186 IPR016461 GO:0008168
Ssu5g1647 186 Pfam O-methyltransferase domain 46 185 IPR001077 GO:0008171
Ssu5g1647 186 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 42 186 - -
Ssu5g1647 186 PANTHER O-METHYLTRANSFERASE 42 186 IPR016461 GO:0008168
Ssu5g1647 186 Gene3D Vaccinia Virus protein VP39 9 186 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1647 Ssu-Chr5 50554460 50555810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1647 50 186 Monolignol Biosynthesis Gene Families AT5G54160 38.686 1.91e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1647 - K22588 gmx:100818947 183.726