Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1644 ATGGGGGTGCTGGAGGAGCTTCTGATGATATACAACCTTTTCTCCGGGGAGATTCCGGCGAGTCTGGGCACGTGCCAGAGCTTGACACGTGTGAGACTCGGGTTCAACCGGTTGTCCGGCGAGGTTCCCGCGGGGATCTGGGGCCTGCCGCACGTGTATCTCCTCGAACTCGTTGACAACTCGTTCTCGGGTTCCATCGCGAGGACCGTTGCCGGCGCGGGGAACCTGTCGTTGTTGATTTTGTCGAAGAACAACTTCACGGGAGCGATTCCCGATGAGGTTGGGTGGCTGGAGAATCTCGTGGAGTTTTCCGCTAGCGATAACAAGTTCAGTGGTGCGTTGCCTGACGGCATTGTGAATCTCGGGCAGCTTGGGATTCTTGATTTTCATAACAACAGACTCTCGGGGGAGCTTCCAAAGGGGATTCGTTCGTGGAAGAAGCTCAATGATTTGAATTTGGCTAACAATGAGATTGGTGGGAGGATTCCCGATGAGATTGGGGGTTTGTCCGTGCTGAATTTTCTAGATCTTTCTAGAAACCGCTTTTCGGGGAAGGTCCCTCACGGGTTGCAGAATCTGAAGCTGAATCAGCTCAATTTGTCTTATAATCGGTTATCTGGTGAACTTCCTCCTTTGTTGGCTAAGGATATGTATAGGTCTAGTTTCCTTGGGAATCCTGGCTTGTGTGGGGATTTGAGGGGTTTGTGTGATCATGGTAGGGGTGAGGAGAAGAGCGTGGGTTATGTTTGGCTGCTTAGAACCATCTTCATTGTTGCCACTCTGGTTTTCTTTGTTGGTGTGGTTTGGTTTTACTTTAGGTATAAGAATTTCCAGGAAGCGAAGAGGGCGATTGATAAGTCGAAGTGGACATTGATGTCGTTTCATAAGCTGGGTTTTAGTGAAGATGAGATCTTGAACTGCCTTGATGATGATAATGTGATTGGAAGTGGATCCTCGGGGCAGGTCTACAAGGTTGTGCTTAGCAGTGGGGAGGTTGTTGCTGTGAAGAAGATATGGGGAGGGGTGAGGAAGGAGGTAGAGAGTGGGGATGTTGAGAAGGGTAGGGTTCAGGACAATGCTTTTGACGCGGAGGTTGAGACTCTGGGTAAAATCAGGCACAAGAACATTGTCAAGCTGTGGTGTTGCTGCACCACCAGGGATTGCAAGCTCTTGGTTTATGAGTATATGCCGAATGGTAGTCTCGGTGATTTGCTGCATAGTAGTAAGGGAGGGTTGTTGGATTGGCCAACTAGGTACAAGATAGCTGTGGATGCTGCAGAAGGCCTCTCTTATCTGCATCATGACTGTGTTCCCGCAATTGTTCATAGAGATGTCAAGTCTAACAATATTTTGTTGGATGGGGACTTCGGTGCAAGGGTGGCAGATTTTGGAGTAGCTAAGGCAGTCGAAACCACAGGGAAAGGAACTAAATCCATGTCTGTCATAGCTGGCTCTTGTGGCTATATTGCACCAGGTTAG 1479 0.4915 MGVLEELLMIYNLFSGEIPASLGTCQSLTRVRLGFNRLSGEVPAGIWGLPHVYLLELVDNSFSGSIARTVAGAGNLSLLILSKNNFTGAIPDEVGWLENLVEFSASDNKFSGALPDGIVNLGQLGILDFHNNRLSGELPKGIRSWKKLNDLNLANNEIGGRIPDEIGGLSVLNFLDLSRNRFSGKVPHGLQNLKLNQLNLSYNRLSGELPPLLAKDMYRSSFLGNPGLCGDLRGLCDHGRGEEKSVGYVWLLRTIFIVATLVFFVGVVWFYFRYKNFQEAKRAIDKSKWTLMSFHKLGFSEDEILNCLDDDNVIGSGSSGQVYKVVLSSGEVVAVKKIWGGVRKEVESGDVEKGRVQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPAIVHRDVKSNNILLDGDFGARVADFGVAKAVETTGKGTKSMSVIAGSCGYIAPG 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1644 492 ProSitePatterns Protein kinases ATP-binding region signature. 314 337 IPR017441 GO:0005524
Ssu5g1644 492 SUPERFAMILY L domain-like 4 229 - -
Ssu5g1644 492 PANTHER LRR RECEPTOR-LIKE KINASE 2 491 - -
Ssu5g1644 492 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 491 - -
Ssu5g1644 492 ProSiteProfiles Protein kinase domain profile. 308 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1644 492 Gene3D Phosphorylase Kinase; domain 1 292 395 - -
Ssu5g1644 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Ssu5g1644 492 Pfam Protein kinase domain 311 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1644 492 SUPERFAMILY Protein kinase-like (PK-like) 303 491 IPR011009 -
Ssu5g1644 492 Gene3D Transferase(Phosphotransferase) domain 1 396 492 - -
Ssu5g1644 492 SMART serkin_6 308 489 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1644 492 Gene3D Ribonuclease Inhibitor 1 238 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1644 Ssu-Chr5 50508383 50509861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1644 2 491 Receptor kinase-like Gene Family AT1G28440 71.805 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu5g1644 Pkinase 1.4e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1644 - - gmx:100810256 932.169