Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1643 ATGAAACATGGCAGCGGCTACATTGCTTATGATTTGGTCATGGTTACTCTATCCTTATCCCTCGTCGTTCTTGGTGTTGTCCTATTTCTTGTTTGCAAGAAGAAACCGGTTGAGTCAGAAGAAACACTTGCTGTGAAGCACTGTGCTCGTGCGTACTCGTTGATGGACATTGATGCTGCCACCGATGGCTTCAATCGTAGGAGAATTGTGGGAAAGGGTCGTCTAGGAACCGTGTATGCGGGGGTGCAAGAGAGTGGAGAACTTGTAGCCGTGAAAAGGATTCACCCCGTGCTTGTGTTGAGCAATGCAGGATTTGGGTTCTCATCGGTGTTGAAATGGCTCTCTTCAGCTCAACACCCCAACGTAGTTCCCATAATAGGATTCTCAGAAGCACCGGGTGAGAGGATCATAGTAATGGAGTTTGGGCGCATGGTGAGTTTGGACTTCTATTTGCATCAAAACCTTGATGGGGCATCACTTTTGGATTGGAACAAGAGGATCAGAATTGCGGCTGGAGCAGCTAGGGGGCTTCACTACCTGCATGAAGTGGCAACGCCAAGCATTGTACATGGGTGTGTCAAGTCCTCAAATGTTTTAATTGATGTGAGCTTTTGTCCTAGGATTTCTGATTATGGTCTCAACTTTTTGGCACCCCGAGAAAAGAGAGGCCTAGCAGGTTATGTGGATGATGAGTATTGGAATGAAAGAGGGGGTGGTGCTAGCAAGGAAAGTGATGTTTATGGGTTAGGAGTGGTCGTGCTTGAGCTATTAAGTGGTAGAGGATGCGACGAAGGATTGACAGCAAAGTGGGCATTGCCTTTGATCAAGGAAATGATTTTTAGGGAACTTTTGGATCCTAGATTGGTAATTCCTTCTGACATGAAGCCTTTAGTTAGATTAGGCAAAGTTGCTTTAGCTTGTGTTGGTAATTCAAGGAAGTGTAGGCCTTCCATGGCTCAAGTGACAACTATTTTGAACAATTTAGAGATGGAAGTGTGCATCTGA 1005 0.4557 MKHGSGYIAYDLVMVTLSLSLVVLGVVLFLVCKKKPVESEETLAVKHCARAYSLMDIDAATDGFNRRRIVGKGRLGTVYAGVQESGELVAVKRIHPVLVLSNAGFGFSSVLKWLSSAQHPNVVPIIGFSEAPGERIIVMEFGRMVSLDFYLHQNLDGASLLDWNKRIRIAAGAARGLHYLHEVATPSIVHGCVKSSNVLIDVSFCPRISDYGLNFLAPREKRGLAGYVDDEYWNERGGGASKESDVYGLGVVVLELLSGRGCDEGLTAKWALPLIKEMIFRELLDPRLVIPSDMKPLVRLGKVALACVGNSRKCRPSMAQVTTILNNLEMEVCI 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1643 334 SUPERFAMILY Protein kinase-like (PK-like) 42 325 IPR011009 -
Ssu5g1643 334 Pfam Protein kinase domain 65 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1643 334 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 6 333 - -
Ssu5g1643 334 Gene3D Phosphorylase Kinase; domain 1 28 141 - -
Ssu5g1643 334 Gene3D Transferase(Phosphotransferase) domain 1 144 332 - -
Ssu5g1643 334 PIRSF ILK 33 333 - -
Ssu5g1643 334 ProSiteProfiles Protein kinase domain profile. 64 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu5g1643 334 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 6 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1643 Ssu-Chr5 50498748 50499752 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1643 41 325 Receptor kinase-like Gene Family AT3G59420 39.799 7.62e-54 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Ssu5g1643 Pkinase 8.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1643 - - gmx:100809726 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g1643 5 50498748 50499752 Ssu1g0484 1 10866332 10867336 PCT