Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1642 ATGAGATGGTGCAATGACTCAGACGAGGAGGGGGGAATTGAACTGGTCACGCCCACTATTACTCCTACAACTAATAACACTGTTGTTACTGACACAAAACCAACCGAAATTCGAACCATAACTTGCCCCTCATGTGGCCATAACATTGAATTCCAAGATCAGACTGGAATCAATGACTTGCCGGGGTTACCAGCTGGGGTGAAGTTCGATCCGAATGACCAAGAGATATTAGAGCATTTAGAAGCAAAGGTACTGTCTGATGTGCCCAAGCTCCATCCCCTTATTGATGAGTTCATATCAACGCTTGAAGGAGAGAACGGGATCTGTTATACGCACCCAGAAAAGCTTCCAGGTGTAAGCAAAGATGGACAGATCCGCCACTTCTTTCATAGGCCATCTAAAGCATACACAACCGGAAcgaggaaaagaagaaaggttcACACTGATGAAGAAGGAAGCGAGACAAGATGGCACAAAACAGGCAAAACTAGGCCAGTTTTTGTTGGTGGTGCTGTGAAGGGTTTCAAGAAAATACTGGTCCTCTACACCAACTATGGGAGGCAAAAGAAGCCCGAGAAGACTAACTGGGTGATGCATCAATACCATCTTGGCAGTaatgaagaagagaaagatgggGAATTGGTGGTTTCAAAGGtcttctaccaaacacaacCTCGACAATGTGGTAATTCCATTACCAAGCAGGATCCTTATGATGAAGAAAGATTGACTAACCGAAGTGTCGTCCATGATGACAATATAATACCTAAAAATGCAAATCTTATGGACTACTACAATCCTTCTTTCATAAATTATGACCATGTGGGTGGTCGTAGTAATAGGGAAAGTTCACCTCAACTTATTCCAAATTTGGTTGTGCAAGGTGATAGCTCTTCTTTCATTCGATTAGCAATGGATGCAACCAAAGCCAGGCTGGACAGAAAATAG 948 0.4072 MRWCNDSDEEGGIELVTPTITPTTNNTVVTDTKPTEIRTITCPSCGHNIEFQDQTGINDLPGLPAGVKFDPNDQEILEHLEAKVLSDVPKLHPLIDEFISTLEGENGICYTHPEKLPGVSKDGQIRHFFHRPSKAYTTGTRKRRKVHTDEEGSETRWHKTGKTRPVFVGGAVKGFKKILVLYTNYGRQKKPEKTNWVMHQYHLGSNEEEKDGELVVSKVFYQTQPRQCGNSITKQDPYDEERLTNRSVVHDDNIIPKNANLMDYYNPSFINYDHVGGRSNRESSPQLIPNLVVQGDSSSFIRLAMDATKARLDRK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1642 315 Pfam No apical meristem (NAM) protein 64 203 IPR003441 GO:0003677|GO:0006355
Ssu5g1642 315 PANTHER NAC DOMAIN-CONTAINING PROTEIN 10 1 299 - -
Ssu5g1642 315 Gene3D NAC domain 72 226 IPR036093 GO:0003677|GO:0006355
Ssu5g1642 315 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 299 IPR044799 GO:0003700
Ssu5g1642 315 ProSiteProfiles NAC domain profile. 63 222 IPR003441 GO:0003677|GO:0006355
Ssu5g1642 315 SUPERFAMILY NAC domain 58 222 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1642 Ssu-Chr5 50474649 50478127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1642 1 233 NAC Transcription Factor Family AT4G28500 72.222 4.68e-124 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu5g1642 NAM 1.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1642 - - gmx:100795920 560.836