Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1635 ATGGCTGGATTGATCGATCTCAACAACGCCACCGAGGACGATGAAACGCCGTCGTATGGCCCCTCCTCCGTGTGCCTGGAGCTGTGGCACGCGTGCGCGGGCCCGATGATTTCGCTGCCTAAGAAAGGGAGCGTTGTCGTGTACTTCCCGCAAGGACACTTGGAACATCTTCACGATTTTCCGCTCCCTGCCTCTGCGAACATCCCCTCCCATGTGTTCTGTCGCGTTCTCGATGTCAAGCTTCATGCTGAGGAAGGGAGCGATGAAGTGTTTTGCCAGGTGGTGTTGGTTCCCGAAAGTGAGCAAGTGCAGCAGAAGTTGCGGGGAGGGGAAATTGATGCTGATGGGGAAGAGGAGGATGCTGAAGCTGTGATGAAGTCGACACCCCACATGTTCTGCAAGACATTGACTGCTTCTGATACTAGCACTCATGGGGGATTCTCTGTGCCTCGTCGTGCGGCCGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACTGAGACCTTCACAGGAGCTTGTGGCGAAGGATCTGCATGGTCAGGAATGGAGGTTTCGACATATTTACAGGGGGCAGCCACGAAGACACTTGCTTACTACAGGATGGAGTGCATTTGTGAACAAGAAGAAACTTGTATCTGGAGATGCTGTTCTGTTTCTGAGGGGTGAGGATGGAGAACTGAGATTGGGCATTCGTAGGGCTGCTCAATTGAAAAGTGGCAGCACCTTTTCAGCTCTTTCTGGCCAGCAATTGAATCTTAGCAGTCTTGTGGATGTGGTTAATGCTTTATCTACAAGAAGTGCCTTTAGCATTCATTATAACCCGAGGGCCAGCTCATCTGAGTTCATCATACCTATCCACAAATTCTTAAAGAGCCTTGATTATTCTTATTCAGTTGGAATGAGGTTCAGGGTGCGTTTTGAAACTGAAGATGCTACAGAGCGAAGATTCACAGGATTAATTGTTGGAGTTTCTGATGTGGATCCTGTTAGATGGCCTGGATCAAAATGGAGATGCCTAATGGTAAGGTGGGATGACTTAGAAGCTGCGAGGCATAATAGGGTTTCCCCATGGGAGATTGAGCCATCTGGTTCTGCTTCTACTGGGAATAACTTGATATCAGCTGGTTTGAAGAGGACCAAGATTGGAATGCCTTCAGCCAAGCTAGAATTTCCAGTTTCTAATGCGATTGGAACATCAGACTTTGGGGAATCACTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACTACTTTTGATAGTATTAATGTTCAGAGTCACCAGCTATCTGATTTGAGGAGGTGCTATCCTGGCTCAAACTGTCCCAGGATTGCTGCAACAGGAAATAGCATTGGAATCCCACAAGTGAGTTCCAATGTTTCCTGCAATGGCATAGGCTTTAGTGAATCTTTCAGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCCAGCCAACCATATGGAAGGGCCCTGTCTGTTGATGAGGCTTGTGGAAATGGTCGCTTTGGACTTTTTGATGGTTACCAGGTGCTGAGATCCAGAAATGGATGGTCTTCCCACATGAATAACAATTCTTCACATTTGCATCCACCTGTTCCATCTGGGCAAGTTTCATCTCCATCATCTGTGTTAATGTTCCAGCAAGCAGTCAATCCTGTTTCAAACTCGGATTATAACCACAAAATTAATCAGGTGATGGATGGTAAAGTTCATCAACGAGGTTCATACGCTTCTGAAGTGAAAGGTGCAAAATTTGGATCAACCCCCTATGAGCCTCTTCTCCATGGACTAGCTCAGGAAGGCGCAAAttcttttggtctttcaaaCTTGCATAATCAGTTAGATAGTTCACGTTCACGGGATTCCATTTCAATACTGAGAGCTAGTCAAGAGTTGGTTCCCTCGTGTAAAAGTAGATGCAGAGTCTTCGGTTTTTCATTAACTGAGGCTTCCCCCGTTGCAAATAAAGAGGTTGCTGACCCGTCTGCAGTCACATGTTCTGGACCTTCCTTTACAAGACATGTTGAAGATGATTTCCATCCAGGGCATTCGCTTAGGAGCAAGACAGTGGGAAGTTATTGCACCAAAGGTGTGCTGCAATATTGA 2121 0.463 MAGLIDLNNATEDDETPSYGPSSVCLELWHACAGPMISLPKKGSVVVYFPQGHLEHLHDFPLPASANIPSHVFCRVLDVKLHAEEGSDEVFCQVVLVPESEQVQQKLRGGEIDADGEEEDAEAVMKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQLRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSGSTFSALSGQQLNLSSLVDVVNALSTRSAFSIHYNPRASSSEFIIPIHKFLKSLDYSYSVGMRFRVRFETEDATERRFTGLIVGVSDVDPVRWPGSKWRCLMVRWDDLEAARHNRVSPWEIEPSGSASTGNNLISAGLKRTKIGMPSAKLEFPVSNAIGTSDFGESLRFQKVLQGQEILGVNTTFDSINVQSHQLSDLRRCYPGSNCPRIAATGNSIGIPQVSSNVSCNGIGFSESFRFQKVLQGQEILPSQPYGRALSVDEACGNGRFGLFDGYQVLRSRNGWSSHMNNNSSHLHPPVPSGQVSSPSSVLMFQQAVNPVSNSDYNHKINQVMDGKVHQRGSYASEVKGAKFGSTPYEPLLHGLAQEGANSFGLSNLHNQLDSSRSRDSISILRASQELVPSCKSRCRVFGFSLTEASPVANKEVADPSAVTCSGPSFTRHVEDDFHPGHSLRSKTVGSYCTKGVLQY 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1635 706 SUPERFAMILY DNA-binding pseudobarrel domain 125 240 IPR015300 -
Ssu5g1635 706 SMART B3_2 132 234 IPR003340 GO:0003677
Ssu5g1635 706 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Ssu5g1635 706 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 15 706 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu5g1635 706 PANTHER AUXIN RESPONSE FACTOR 15 706 - -
Ssu5g1635 706 Gene3D - 295 368 - -
Ssu5g1635 706 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Ssu5g1635 706 CDD B3_DNA 130 232 IPR003340 GO:0003677
Ssu5g1635 706 Pfam Auxin response factor 259 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu5g1635 706 Gene3D - 130 234 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1635 Ssu-Chr5 50291480 50297420 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1635 22 486 B3 DNA Binding Superfamily AT5G60450 50.524 6.43e-146 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu5g1635 B3 1.8e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1635 K14486 - gmx:100808119 1264.6