Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g1634 atggATTTCCGTAACAATGGCACTGAAGAGAGTGAACTGTATCACGCTCAAACCCATTTGTACAAACACGTATACAACTTCATAAGCTCCATGGCTCTCAAATCTGCTACGGAGCTAGGCACAGCAGACGCAATTCACAGCCACGGAAAACCCATGACTCTTTCCGAGTTGGCCTCAGCTCTGAAACTCCATCCCTCAAAAGTCGGCGTTCTCTATCGCTTCATGCGCCTTCTAACACACAACGGCTTCTTCACCAAAGCAACAGTAGCATCACAGAACGGTAAAGAAGAAACAGCATATGCTCTGACTCCCCCATCCAAGCTTCTAATCAGACGCGGGTCTACATGTTTGGCACCCATTGTTAAGGGAGCGCTTCACTCAAGTTCCCTCGACATGTGGCACTCCTCCAATAAATGGTTTACTGAGGATAAGGAACTCTCGCTGTTTGAGAGCACAACCGGGGAGAGCTACTGGGACTTCCTGAACAGTGATTTTGATCTTCTGAGATTGTTTCAGGAGGCAATGACAGCTGATTCTCAAATGTTCAAGCTAGGCCTCAAAAGATGCAAGCATGTGTTTGAGGGATTGAGTTCACTTGTCGATGTGGGAGTCTTTGACCAACCACAAGTCGTGGCTAACTTGACTGAAACCGATAATTCGAATTTGGTTGGCGGGGATATGTTCAAGTCCATCCCTTCGGCCGATGCAGTTTTCCTCAAGTGGGTTCAGCATGATTGGAATGATGAACACCCcgtgaagatttttaaaaactgcaaagaagCTATTTCTCGCAAAGGAAAAAATGGAAAGGTGATAATCATAGACATAGCAATTGATGAAGCAAGCGATGATCGTGACTTGACTGAGTTGAAGCTGGACTTTGACCTAGTGATGCTGACTATcaatggaaaagaaagagaacagAAAGAATGGGAGAAACTCATATACGACGCAGGCTTCAGCAGCTACAAGATTACCCCTGTATTTGGCTTCAAATCTCTCATCGAAGTTTATCCTTGA 1020 0.4333 MDFRNNGTEESELYHAQTHLYKHVYNFISSMALKSATELGTADAIHSHGKPMTLSELASALKLHPSKVGVLYRFMRLLTHNGFFTKATVASQNGKEETAYALTPPSKLLIRRGSTCLAPIVKGALHSSSLDMWHSSNKWFTEDKELSLFESTTGESYWDFLNSDFDLLRLFQEAMTADSQMFKLGLKRCKHVFEGLSSLVDVGVFDQPQVVANLTETDNSNLVGGDMFKSIPSADAVFLKWVQHDWNDEHPVKIFKNCKEAISRKGKNGKVIIIDIAIDEASDDRDLTELKLDFDLVMLTINGKEREQKEWEKLIYDAGFSSYKITPVFGFKSLIEVYP 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g1634 339 PANTHER O-METHYLTRANSFERASE 5 203 IPR016461 GO:0008168
Ssu5g1634 339 PANTHER ISOFLAVONE 4'-O-METHYLTRANSFERASE 5 203 - -
Ssu5g1634 339 Gene3D - 2 109 IPR036388 -
Ssu5g1634 339 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 21 339 IPR016461 GO:0008168
Ssu5g1634 339 Gene3D Vaccinia Virus protein VP39 111 203 IPR029063 -
Ssu5g1634 339 Gene3D Vaccinia Virus protein VP39 204 339 IPR029063 -
Ssu5g1634 339 Pfam O-methyltransferase domain 204 321 IPR001077 GO:0008171
Ssu5g1634 339 SUPERFAMILY "Winged helix" DNA-binding domain 10 112 IPR036390 -
Ssu5g1634 339 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 115 338 IPR029063 -
Ssu5g1634 339 PANTHER O-METHYLTRANSFERASE 204 339 IPR016461 GO:0008168
Ssu5g1634 339 PIRSF O-mtase 1 203 IPR016461 GO:0008168
Ssu5g1634 339 PIRSF O-mtase 204 339 IPR016461 GO:0008168
Ssu5g1634 339 PANTHER ISOFLAVONE 4'-O-METHYLTRANSFERASE 204 339 - -
Ssu5g1634 339 Pfam Dimerisation domain 31 79 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g1634 Ssu-Chr5 50202440 50207052 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g1634 31 337 Monolignol Biosynthesis Gene Families AT5G54160 31.325 4.91e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g1634 K22588 - gmx:106795493 518.079